Job Description P12998 Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012 Rank 42 Aligned Residues 343 % Identity 16% Template c2cy8A_ PDB info PDB header:transferase Chain: A: PDB Molecule:d-phenylglycine aminotransferase; PDBTitle: crystal structure of d-phenylglycine aminotransferase (d-phgat) from2 pseudomonas strutzeri st-201 Resolution 2.30 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.											.														.								.
Query SS confidence																							.											.														.								.
Query Sequence		Q	E	K	I	N	A	A	L	D	A	R	R	A	A	D	A	L	R	R	R	Y	.	P	V	A	Q	G	A	G	R	W	L	.	V	A	D	D	R	Q	Y	L	N	F	S	S	N	.	D	Y	L	G	L	S	H	.	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H	V
Query Conservation																							.											.														.								.
Alig confidence																							.											.														.								.																					.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		S	V	F	W	A	Q	R	A	R	S	V	M	P	D	G	A	F	D	P	H	G	L	F	I	S	D	A	Q	G	V	H	K	T	D	V	D	G	N	V	Y	L	D	F	F	G	G	H	G	A	L	V	L	G	H	G	H	P	R	V	N	A	A	I	A	E	A	L	S	H	G	V	Q	Y	A	A	.	.	.	.	.
Template Known Secondary structure													S						S	S										B	T					T	T							S		T	T	T	T	S		T	T		B	T													T	T	T		S	S		S	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																				.																					.	.	.
Query SS confidence																				.																					.	.	.
Query Sequence		S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	.	G	Y	S	R	A	L	L	F	I	S	G	F	A	A	N	Q	A	V	I	A	.	.	.	A	M	M	A	K	E	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A	A	S	L	S	P	S	Q	L	R	R	F	A	H	N	D	V
Query Conservation																				.																					.	.	.
Alig confidence		.	.																	.																					.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																																										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	S	H	P	L	E	V	R	W	A	E	R	I	V	A	A	F	P	S	I	R	K	L	R	F	T	G	S	G	T	E	T	T	L	L	A	L	R	V	A	R	A	F	T	G	R	R	M	I	L	R	F	E	G	T	T	A	N	.	.	.	.	.	.	.	.	.	.	.	.	T	L	L	I	R	P	D	D	I
Template Known Secondary structure		.	.	S																T	T		S						S																													G	G	G	.	.	.	.	.	.	.	.	.	.	.	.						T	T
Template Predicted Secondary structure		.	.																																																										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.													.	.	.	.	.	.	.	.	160
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																	.	.	.	.
Query SS confidence																																	.	.	.	.
Query Sequence		T	H	L	A	R	L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A	P	.	.	.	.	L	A	E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V
Query Conservation																																	.	.	.	.
Alig confidence																																	.	.	.	.																									.	.
Template Conservation																																																													.	.
Template Sequence		E	G	M	R	E	V	F	A	N	H	G	S	D	I	A	A	F	I	A	E	P	V	G	S	H	F	G	V	T	P	V	S	D	S	F	L	R	E	G	A	E	L	A	R	Q	Y	G	A	L	F	I	L	D	E	V	I	S	G	F	.	.	R	V	G	N	H	G	M	Q	A	L	L	D	V	Q	P	D	L	T	C
Template Known Secondary structure												G	G	G								S	S						T																		T	T								T	T	T	T	T	.	.	T	T		T	T							T				S
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	F	G	K	G	F	G	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H	L	I	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	P	F
Query Conservation
Alig confidence																													.	.	.	.	.
Template Conservation																													.	.	.	.	.
Template Sequence		L	A	K	A	S	A	G	G	L	P	G	G	I	L	G	G	R	E	D	V	M	G	V	L	S	R	G	.	.	.	.	.	S	F	T	G	N	P	I	T	A	A	A	A	I	A	A	I	D	T	I	L	E	D	D	V	C	A	K	I	N	D	L	G	Q	F	A	R	E	A	M	N	H	L	F	A	R	K	G	L
Template Known Secondary structure				G	G	G	G	T	T	S	S												T	T	S	S	S		.	.	.	.	.																						T	T																							T	T
Template Predicted Secondary structure																													.	.	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.						.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		312		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.																				.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure			.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	.	L	A	D	S	C	S	A	I	Q	P	L	I	V	G	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	A	L	Q	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I	R	P	P	T	V	P	A	G	T	A	R	L	R	L	T	L	T	A	A	H	E	M	Q
Query Conservation			.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	W	L	A	Y	G	R	F	S	G	F	H	L	M	P	G	L	P	P	N	T	T	D	T	G	S	I	T	R	A	E	V	A	R	P	D	V	K	M	I	A	A	M	R	M	A	L	I	L	E	G	V	D	I	G	G	R	G	.	.	.	.	.	.	.	.	.	.	.	S	V	F	L	S	A	Q	H	E	R	E
Template Known Secondary structure									T	T							T	S		T	T									T	T		S																		T	T				B	T	T	T	.	.	.	.	.	.	.	.	.	.	.						T	T
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.												.	410	.	.	.	.	.	.	.	.	.
		372	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	D	R	L	L	E	V	L	H	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	V	E	H	L	V	T	T	F	D	R	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions