Job Description P12998 Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012 Rank 22 Aligned Residues 359 % Identity 20% Template c1oatB_ PDB info PDB header:aminotransferase Chain: B: PDB Molecule:ornithine aminotransferase; PDBTitle: ornithine aminotransferase Resolution 2.50 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.													.	.	.
Query SS confidence																																	.													.	.	.
Query Sequence		Q	E	K	I	N	A	A	L	D	A	R	R	A	A	D	A	L	R	R	R	Y	P	V	A	Q	G	A	G	R	W	L	.	V	A	D	D	R	Q	Y	L	N	F	S	S	.	.	.	N	D	Y	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H	V
Query Conservation																																	.													.	.	.
Alig confidence																																	.													.	.	.							.																									.	.
Template Conservation																																																							.																									.	.
Template Sequence		S	D	D	I	F	E	R	E	Y	K	Y	G	A	H	N	Y	H	P	L	P	V	A	L	E	R	G	K	G	I	Y	L	W	D	V	E	G	R	K	Y	F	D	F	L	S	S	Y	S	A	V	N	Q	G	H	.	C	H	P	K	I	V	N	A	L	K	S	Q	V	D	K	L	T	L	T	S	R	A	F	Y	.	.
Template Known Secondary structure													S								S								B	T					T	T							S	S					T		T	T		B	.	T													T	T		S				T	T	S		.	.
Template Predicted Secondary structure																																																							.																									.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.												.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.																														.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.																														.	.
Query Sequence		S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	S	R	A	L	L	F	I	S	G	F	A	A	N	Q	A	V	I	A	.	.	.	.	.	.	.	.	.	.	.	A	M	M	A	K	E	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A	A	S	L	S	P	S	Q	.	.
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.																														.	.
Alig confidence		.	.	.																																				.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	N	N	V	L	G	E	Y	E	E	Y	I	T	K	L	F	N	Y	H	K	V	L	P	M	N	T	G	V	E	A	G	E	T	A	C	K	L	A	R	K	W	G	Y	T	V	K	G	I	Q	K	Y	K	A	K	I	V	F	A	A	G	N	F	W	G	R	T	L	S	A	I	S	S	S	T	D	P	T	S
Template Known Secondary structure		.	.	.		S	S													T		S						S	S																			T	T				T	T								T	T					S	S					T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
												147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	L	R	R	F	A	H	N	D	V	T	H	L	A	R	L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A	P	.	.	.	.	L	A	E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I
Query Conservation		.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																		.	.																						.	.	.	.																						.
Template Conservation																													.	.																																															.
Template Sequence		Y	D	G	F	G	P	F	M	P	G	F	D	I	I	P	Y	N	D	L	P	A	L	E	R	A	L	Q	.	.	D	P	N	V	A	A	F	M	V	E	P	I	Q	G	E	A	G	V	V	V	P	D	P	G	Y	L	M	G	V	R	E	L	C	T	R	H	Q	V	L	F	I	A	D	E	I	Q	.	T	G	L	A
Template Known Secondary structure			T	T	S		S			S	S						T	T									T	T	.	.	S	T	T								S	S	B	T	T	T	T		B				T	T													T								T	T	.	T	T	T	T
Template Predicted Secondary structure																													.	.																																															.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	G	.	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H	L	I	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R
Query Conservation																													.
Alig confidence																													.																				.	.	.	.	.
Template Conservation																																																	.	.	.	.	.
Template Sequence		R	T	G	R	W	L	A	V	D	Y	E	N	V	R	P	D	I	V	L	L	G	K	A	L	S	G	G	L	Y	P	V	S	A	V	L	C	D	D	D	I	M	L	T	I	K	P	G	.	.	.	.	.	E	H	G	S	T	Y	G	G	N	P	L	G	C	R	V	A	I	A	A	L	E	V	L	E	E	E	N	L
Template Known Secondary structure		T	T	S	S	S	S	G	G	G	G	G	T				S						G	G	G	G	T	T	S	S													T	T	S		T	T	.	.	.	.	.	S	S			S	S	T	T																		T	T
Template Predicted Secondary structure																																																	.	.	.	.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.						.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.				.	.	.	.	.	.	.	320	.	.	.	.	.			.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.														.	.
Query SS confidence																							.	.	.														.	.
Query Sequence		R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	P	F	T	.	.	.	L	A	D	S	C	S	A	I	Q	P	L	I	V	.	.	G	D	N	S	R	A	L	Q	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I	R	P	P	T	V	P	A	G	T	A	R	L	R	L	T	L	T	A
Query Conservation																							.	.	.														.	.
Alig confidence																							.	.	.														.	.																							.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.
Template Sequence		A	E	N	A	D	K	L	G	I	I	L	R	N	E	L	M	K	L	P	S	D	V	V	T	A	V	R	G	K	G	L	L	N	A	I	V	I	K	E	T	K	D	W	D	A	W	K	V	C	L	R	L	R	D	N	G	L	L	A	K	P	.	.	.	.	.	.	.	T	H	G	D	I	I	R	F	A	P	P	L
Template Known Secondary structure																	T	T	S		T	T	T								T	T									B	T	T	B												T	T					B	.	.	.	.	.	.	.	S	S	S	S								T
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.								.	.	.	410	.	.	.	.	.	.	.	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	E	M	Q	D	I	D	R	L	L	E	V	L	H	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	K	E	D	E	L	R	E	S	I	E	I	I	N	K	T
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions