Job Description P0AGA2 Confidence 100.00% Date Thu Jan 5 11:28:35 GMT 2012 Rank 3 Aligned Residues 402 % Identity 46% Template c3dl8H_ PDB info PDB header:protein transport Chain: H: PDB Molecule:preprotein translocase subunit secy; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca Resolution 7.50 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	L	G	E	L	K	R	R	L	L	F	V	I	G	A	L	I	V	F	R	I	G	S	F	I	P	I	P	G	I	D	A	A	V	L	A	K	L	L	E	Q	Q	R	G	T	I	I	E	M	F	N	M	F	S	G	G	A	L	S	R	A	S	I	F	A	L	G	I	M	P	Y	I	S	A	S	I	I	I	Q
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	E	L	K	E	L	R	Q	K	F	I	F	T	L	L	M	F	V	I	Y	R	L	G	S	H	I	P	I	P	G	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	L	Y	D	I	F	S	G	G	N	L	G	R	L	T	V	F	A	L	G	V	M	P	Y	I	S	A	S	I	M	M	Q
Template Known Secondary structure			S																									S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S	S	S	S			S	S	S				S	S	S	S	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40																.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																.																																					.	.
Query SS confidence																.																																					.	.
Query Sequence		L	L	T	V	V	H	P	T	L	A	E	I	K	K	.	E	G	E	S	G	R	R	K	I	S	Q	Y	T	R	Y	G	T	L	V	L	A	I	F	Q	S	I	G	I	A	T	G	L	P	N	M	P	.	.	G	M	Q	G	L	V	I	N	P	G	F	A	F	Y	F	T	A	V	V	S	L	V	T	G	T	M	F
Query Conservation																.																																					.	.
Alig confidence																.																																					.	.
Template Conservation
Template Sequence		L	L	T	V	A	I	P	S	L	Q	R	L	A	K	E	E	G	D	Y	G	R	Y	K	I	N	E	Y	T	K	Y	L	T	L	F	V	A	T	V	Q	S	L	G	I	A	F	W	I	R	G	Q	V	S	P	K	G	I	P	V	V	E	N	P	G	I	S	F	I	L	I	T	V	L	T	L	V	A	G	T	M	F
Template Known Secondary structure							S	S		S	S	S		S		S	S	S																																	S		S	S						S	S	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	W	L	G	E	Q	I	T	E	R	G	I	G	N	G	I	S	I	I	I	F	A	G	I	V	A	G	L	P	P	A	I	A	H	T	I	E	Q	A	R	Q	G	D	L	H	F	L	V	L	L	L	V	A	V	L	V	F	A	V	T	F	F	V	V	F	V	E	R	G	Q	R	R	I	V	V	N	Y	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	W	I	A	D	R	I	T	E	K	G	I	G	N	G	A	S	L	I	I	F	A	G	I	V	A	N	F	P	N	A	V	I	Q	F	Y	E	K	V	K	T	G	D	I	G	P	L	T	L	L	L	I	I	A	L	I	I	A	I	I	V	G	I	V	Y	V	Q	E	A	E	R	R	I	P	I	Q	Y	P	G
Template Known Secondary structure													T		T	T														T	T	T	T	S	S					S	S	S		S	S	S		T																		T		S										B		S	S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	Q	G	R	R	V	Y	A	A	Q	S	T	H	L	P	L	K	V	N	M	A	G	V	I	P	A	I	F	A	S	S	I	I	L	F	P	A	T	I	A	S	W	F	G	G	G	T	G	W	N	W	L	T	T	I	S	L	Y	L	Q	P	G	Q	P	L	Y	V	L	L	Y	A	S	A	I	I	F	F	C	F
Query Conservation
Alig confidence																																																				.	.	.	.
Template Conservation																																																				.	.	.	.
Template Sequence		R	Q	V	G	R	Q	L	Y	A	G	R	K	T	Y	L	P	I	K	I	N	P	A	G	V	I	P	I	I	F	A	Q	A	L	L	L	I	P	S	T	L	L	N	F	V	Q	N	P	F	I	K	.	.	.	.	V	I	A	D	M	F	Q	P	G	A	I	F	Y	N	F	L	Y	V	T	F	I	V	F	F	T	Y
Template Known Secondary structure		S		B																					S	S																		S		S	S					.	.	.	.	T	T	T	T	T	T	T	T	T
Template Predicted Secondary structure																																																				.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.					.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Y	T	A	L	V	F	N	P	R	E	T	A	D	N	L	K	K	S	G	A	F	V	P	G	I	R	P	G	E	Q	T	A	K	Y	I	D	K	V	M	T	R	L	T	L	V	G	A	L	Y	I	T	F	I	C	L	I	P	E	F	M	R	D	A	M	K	V	P	F	Y	F	G	G	T	S	L	L	I	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	Y	T	A	V	L	I	N	P	V	E	L	A	E	N	L	H	K	A	G	A	F	I	P	G	V	R	P	G	Q	D	T	V	K	Y	L	E	R	I	I	N	R	L	I	F	F	G	A	L	F	L	S	V	I	A	L	I	P	I	L	I	S	V	W	F	N	I	P	F	Y	F	G	G	T	T	A	L	I	V	V
Template Known Secondary structure					T		T	T								T					B	S	S	S	B																																						T	T	S	S			S				S	T
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	I	M	D	F	M	A	Q	V	Q	T	L	M	M	S	S	Q	Y	E	S	A	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	A	L	D	T	F	R	Q	I	E	T	Y	L	I	Q	K	K	Y	K	S	Y	V	R
Template Known Secondary structure																				T	T		S
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.