Job Description P0AGA2 Confidence 100.00% Date Thu Jan 5 11:28:35 GMT 2012 Rank 2 Aligned Residues 393 % Identity 43% Template c3dinF_ PDB info PDB header:membrane protein, protein transport Chain: F: PDB Molecule:preprotein translocase subunit secy; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase Resolution 4.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	E	L	K	R	R	L	L	F	V	I	G	A	L	I	V	F	R	I	G	S	F	I	P	I	P	G	I	D	A	A	V	L	A	K	L	L	E	Q	Q	R	G	T	I	I	E	M	F	N	M	F	S	G	G	A	L	S	R	A	S	I	F	A	L	G	I	M	P	Y	I	S	A	S	I	I	I	Q	L	L
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	P	E	L	R	D	R	I	I	F	T	F	L	A	L	I	V	F	R	M	G	I	Y	I	P	V	P	G	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	F	Y	D	V	F	T	G	G	A	L	S	R	F	S	V	F	T	M	S	V	T	P	Y	I	T	A	S	I	I	L	Q	L	L
Template Known Secondary structure			S			S	S																	S		S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T						S	S	S	S				S	S	S	S	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40																.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	V	H	P	T	L	A	E	I	K	K	E	G	E	S	G	R	R	K	I	S	Q	Y	T	R	Y	G	T	L	V	L	A	I	F	Q	S	I	G	I	A	T	G	L	P	N	M	P	G	M	Q	G	L	V	I	N	P	G	F	A	F	Y	F	T	A	V	V	S	L	V	T	G	T	M	F	L	M	W	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	V	M	P	S	L	K	E	M	L	R	E	G	E	E	G	R	K	K	F	A	K	Y	T	R	R	L	T	L	L	I	G	G	F	Q	A	F	F	V	S	F	S	L	A	R	S	N	P	D	M	V	A	P	G	V	N	V	L	Q	F	T	V	L	S	T	M	S	M	L	A	G	T	M	F	L	L	W	L	G
Template Known Secondary structure					S		S	S	S	S		S			T	T																																		S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	I	T	E	R	G	I	G	N	G	I	S	I	I	I	F	A	G	I	V	A	G	L	P	P	A	I	A	H	T	I	E	Q	A	R	Q	G	D	L	H	F	L	V	L	L	L	V	A	V	L	V	F	A	V	T	F	F	V	V	F	V	E	R	G	Q	R	R	I	V	V	N	Y	A	K	R	Q	Q	G	R
Query Conservation
Alig confidence																																		.	.	.	.
Template Conservation																																		.	.	.	.
Template Sequence		E	R	I	T	E	K	G	I	G	N	G	I	S	I	L	I	F	A	G	I	V	A	R	Y	P	S	Y	I	R	Q	A	Y	.	.	.	.	L	G	G	L	N	L	L	E	W	I	F	L	I	A	V	A	L	I	T	I	F	G	I	I	L	V	Q	Q	A	E	R	R	I	T	I	Q	Y	A	R	R	V	T	G	R
Template Known Secondary structure					T	T	T	T		T	T														S	T	T	S	S	S			S	.	.	.	.	S			S		T																		T	T	T											B	T	T	T	B
Template Predicted Secondary structure																																		.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.					.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	Y	A	A	Q	S	T	H	L	P	L	K	V	N	M	A	G	V	I	P	A	I	F	A	S	S	I	I	L	F	P	A	T	I	A	S	W	F	G	G	G	T	G	W	N	W	L	T	T	I	S	L	Y	L	Q	P	G	Q	P	L	Y	V	L	L	Y	A	S	A	I	I	F	F	C	F	F	Y	T	A	L
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.
Template Sequence		R	V	Y	G	G	A	S	T	Y	L	P	I	K	V	N	Q	G	G	V	I	P	I	I	F	A	S	A	I	V	S	I	P	S	A	I	A	S	I	T	N	N	E	T	L	K	N	.	.	.	.	.	.	.	L	F	R	A	G	G	F	L	Y	L	L	I	Y	G	L	L	V	F	F	F	T	Y	F	Y	S	V	V
Template Known Secondary structure																				S	S																T	T	S	S	T	T						.	.	.	.	.	.	.		S	S	T	T																					T
Template Predicted Secondary structure																																																.	.	.	.	.	.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.								.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	N	P	R	E	T	A	D	N	L	K	K	S	G	A	F	V	P	G	I	R	P	G	E	Q	T	A	K	Y	I	D	K	V	M	T	R	L	T	L	V	G	A	L	Y	I	T	F	I	C	L	I	P	E	F	M	R	D	A	M	K	V	P	F	Y	F	G	G	T	S	L	L	I	V	V	V	V	I	M	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	F	D	P	R	E	I	S	E	N	I	R	K	Y	G	G	Y	I	P	G	L	R	P	G	R	S	T	E	Q	Y	L	H	R	V	L	N	R	V	T	F	I	G	A	V	F	L	V	V	I	A	L	L	P	Y	L	V	Q	G	A	I	K	V	N	V	W	I	G	G	T	S	A	L	I	A	V	G	V	A	L	D
Template Known Secondary structure		T	T						T	T	S							S	S						T	T																																T	T	T	S			S			T	T
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	M	A	Q	V	Q	T	L	M	M	S	S	Q	Y	E	S	A	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	Q	Q	M	E	T	H	M	V	M	R	H	Y	E	G	F	I	K
Template Known Secondary structure															S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.