Job Description P0AGA2 Confidence 100.00% Date Thu Jan 5 11:28:35 GMT 2012 Rank 4 Aligned Residues 407 % Identity 41% Template c2zqpY_ PDB info PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: crystal structure of secye translocon from thermus2 thermophilus Resolution 6.00 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	K	G	G	L	G	E	L	K	R	R	L	L	F	V	I	G	A	L	I	V	F	R	I	G	S	F	I	P	I	P	G	I	D	A	A	V	L	A	K	L	L	E	Q	Q	R	G	T	I	I	E	M	F	N	M	F	S	G	G	A	L	S	R	A	S	I	F	A	L	G	I	M	P	Y	I	S	A	S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	S	A	L	Q	I	P	E	L	R	Q	R	V	L	F	T	L	L	V	L	A	A	Y	R	L	G	A	F	I	P	T	P	G	V	D	L	D	K	I	Q	E	F	L	R	T	A	Q	G	G	V	F	G	I	I	N	L	F	S	G	G	N	F	E	R	F	S	I	F	A	L	G	I	M	P	Y	I	T	A	A	I
Template Known Secondary structure					T	T	S	T	T																			T	T				T	T	B		G	G	G	T					S	S	T	T	T	G	G	G								T	S	T	T	T	T	T		T	T	S	S	T	T		T	T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		I	I	Q	L	L	T	V	V	H	P	T	L	A	E	I	K	K	E	G	E	S	G	R	R	K	I	S	Q	Y	T	R	Y	G	T	L	V	L	A	I	F	Q	S	I	G	I	A	T	G	L	P	N	M	P	G	M	Q	G	L	V	.	.	I	N	P	G	F	A	F	Y	F	T	A	V	V	S	L	V	T	G	T
Query Conservation																																																													.	.
Alig confidence																																																													.	.
Template Conservation
Template Sequence		I	M	Q	I	L	V	T	V	V	P	A	L	E	K	L	S	K	E	G	E	E	G	R	R	I	I	N	Q	Y	T	R	I	G	G	I	A	L	G	A	F	Q	G	F	F	L	A	T	A	F	L	G	A	E	G	G	R	F	L	L	P	G	W	S	P	G	P	F	F	W	F	V	V	V	V	T	Q	V	A	G	I
Template Known Secondary structure						T	T	T	S	S	T	T							S	S	G	G	G	S																		S					T	T	T	T						S	S	S	B		S	S			T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	L	M	W	L	G	E	Q	I	T	E	R	G	I	G	N	G	I	S	I	I	I	F	A	G	I	V	A	G	L	P	P	A	I	A	H	T	I	E	Q	A	R	Q	G	D	L	H	F	L	V	L	L	L	V	A	V	L	V	F	A	V	T	F	F	V	V	F	V	E	R	G	Q	R	R	I	V	V	N	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	L	L	W	M	A	E	R	I	T	E	Y	G	I	G	N	G	T	S	L	I	I	F	A	G	I	V	V	E	W	L	P	Q	I	L	R	T	I	G	L	I	R	T	G	E	V	N	L	V	A	F	L	F	F	L	A	F	I	V	L	A	F	A	G	M	A	A	V	Q	Q	A	E	R	R	I	P	V	Q	Y
Template Known Secondary structure															S	S	S													T	T	S	S													T	S	S		T	T																					T			B
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	R	Q	Q	G	R	R	V	Y	A	A	Q	S	T	H	L	P	L	K	V	N	M	A	G	V	I	P	A	I	F	A	S	S	I	I	L	F	P	A	T	I	A	S	W	F	G	G	G	T	G	W	N	W	L	T	T	I	S	L	Y	L	Q	P	G	Q	P	L	Y	V	L	L	Y	A	S	A	I	I	F	F
Query Conservation
Alig confidence				.	.	.	.	.	.	.																																							.	.	.
Template Conservation				.	.	.	.	.	.	.																																							.	.	.
Template Sequence		A	R	.	.	.	.	.	.	.	Y	G	G	Q	A	T	Y	I	P	I	K	L	N	A	A	G	V	I	P	I	I	F	A	A	A	I	L	Q	I	P	I	F	L	A	A	P	F	Q	.	.	.	D	N	P	V	L	Q	G	I	A	N	F	F	N	P	T	R	P	S	G	L	F	I	E	V	L	L	V	I	L	F
Template Known Secondary structure				.	.	.	.	.	.	.			S			S				B		S	S	S		S	S										T	T					T	T	T	T		S	.	.	.	S	S	T	T								S		T	T	S
Template Predicted Secondary structure				.	.	.	.	.	.	.																																							.	.	.
Template SS confidence
		246	.								.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.				.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		C	F	F	Y	T	A	L	V	F	N	P	R	E	T	A	D	N	L	K	K	S	G	A	F	V	P	G	I	R	P	G	E	Q	T	A	K	Y	I	D	K	V	M	T	R	L	T	L	V	G	A	L	Y	I	T	F	I	C	L	I	P	E	F	M	R	D	A	M	K	V	P	.	F	Y	F	G	G	T	S	L	L
Query Conservation																																																																								.
Alig confidence																																																																								.
Template Conservation
Template Sequence		T	Y	V	Y	T	A	V	Q	F	D	P	K	R	I	A	E	S	L	R	E	Y	G	G	F	I	P	G	I	R	P	G	E	P	T	V	K	F	L	E	H	I	V	S	R	L	T	L	W	G	A	L	F	L	G	L	V	T	L	L	P	Q	I	I	Q	N	L	T	G	I	H	S	I	A	F	S	G	I	G	L	L
Template Known Secondary structure						T	T	T	S	S									T	T	S	S					T	T			S	S	S	T	T	T	T	T	T	T	T	T	T	T	T																				T	T	T	S	S				G	G	G	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	V	V	V	I	M	D	F	M	A	Q	V	Q	T	L	M	M	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	V	G	V	A	L	D	T	L	R	Q	V	E	S	Q	L	M	L	R
Template Known Secondary structure																					.
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.