Job Description P0AGA2 Confidence 100.00% Date Thu Jan 5 11:28:35 GMT 2012 Rank 6 Aligned Residues 385 % Identity 22% Template c2wwbA_ PDB info PDB header:ribosome Chain: A: PDB Molecule:protein transport protein sec61 subunit alpha isoform 1; PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome Resolution 6.48 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	L	D	F	Q	S	A	K	G	G	L	G	E	L	K	R	R	L	L	F	V	I	G	A	L	I	V	F	R	I	G	S	F	I	P	I	P	G	I	D	A	A	V	L	A	K	L	L	E	Q	Q	R	G	T	I	I	E	M	F	N	M	F	S	G	G	A	L	S	R	A	S	I	F	A	L	G	I	M	P
Query Conservation
Alig confidence											.	.	.																															.	.	.	.	.	.	.	.																	.	.
Template Conservation											.	.	.																															.	.	.	.	.	.	.	.																	.	.
Template Sequence		P	E	I	Q	K	P	E	R	K	.	.	.	I	Q	F	K	E	K	V	L	W	T	A	I	T	L	F	I	F	L	V	C	C	Q	I	P	L	F	G	I	M	S	.	.	.	.	.	.	.	.	S	D	S	A	D	P	F	Y	W	M	R	V	I	L	A	S	.	.	N	R	G	T	L	M	E	L	G	I	S	P
Template Known Secondary structure											.	.	.																							S				S	S	S	T	.	.	.	.	.	.	.	.	T	T		S												S	.	.	S		S	S	S		S	S	S	S	T
Template Predicted Secondary structure											.	.	.																															.	.	.	.	.	.	.	.																	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.									.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	S	A	S	I	I	I	Q	L	L	T	V	V	H	P	T	L	A	E	I	K	K	E	G	E	S	G	R	R	K	I	S	Q	Y	T	R	Y	G	T	L	V	L	A	I	F	Q	S	I	G	I	A	T	G	L	P	N	M	P	G	M	Q	G	L	V	I	N	P	G	F	A	F	Y	F	T	A	V	V	S	L
Query Conservation
Alig confidence													.	.										.																																			.	.	.	.	.
Template Conservation													.	.										.																																			.	.	.	.	.
Template Sequence		I	V	T	S	G	L	I	M	Q	L	L	.	.	A	G	A	K	I	I	E	V	G	.	D	T	P	K	D	R	A	L	F	N	G	A	Q	K	L	F	G	M	I	I	T	I	G	Q	S	I	V	Y	V	M	T	G	M	Y	.	.	.	.	.	G	D	P	S	E	M	G	A	G	I	C	L	L	I	T	I	Q	L
Template Known Secondary structure													.	.							S			.	S	S	S	S		S	S																									T	S	S	.	.	.	.	.			S	S		S
Template Predicted Secondary structure													.	.										.																																			.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.						.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																		.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	G	T	M	F	L	M	W	L	G	E	Q	I	T	E	.	R	G	I	G	N	G	I	S	I	I	I	F	A	G	I	V	A	G	L	P	P	A	I	A	H	T	I	E	Q	A	R	Q	G	D	L	H	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																		.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	V	A	G	L	I	V	L	L	L	D	E	L	L	Q	K	G	Y	G	L	G	S	G	I	S	L	F	I	A	T	N	I	C	E	T	I	V	W	K	A	F	S	P	T	T	V	N	T	G	R	G	M	E	F	E	G	A	I	I	A	L	F	H	L	L	A	T	R	T	D	K	V	R	A	L	R	E	A	F	Y
Template Known Secondary structure																	T	T	T		S	S		S																		T			S	S		S				S			T	T	T	T											T		T	T	S	S	S	S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
					218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	L	V	L	L	L	V	A	V	L	V	F	A	V	T	F	F	V	V	F	V	E	R	G	Q	R	R	I	V	V	N	Y	A	K	R	Q	Q	G	R	R	V	Y	A	A	Q	S	T	H	L	P	L	K	V	N	M	A	G	V	I	P	A	I	F	A	S	S	I	I	L	F	P	A	T	I	A	S	W	F
Query Conservation		.	.	.
Alig confidence		.	.	.																																		.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.
Template Sequence		R	Q	N	L	P	N	L	M	N	L	I	A	T	I	F	V	F	A	V	V	I	Y	F	Q	G	F	R	V	D	L	P	I	K	S	A	R	.	.	.	.	.	.	.	Y	R	G	Q	Y	N	T	Y	P	I	K	L	F	Y	T	S	N	I	P	I	I	L	Q	S	A	L	V	S	N	L	Y	V	I	S	Q	M	L
Template Known Secondary structure		S	S	S																									B						B		S	.	.	.	.	.	.	.	S	S	S	B		S				B		T	T	T	S	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.								.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		295	.	.	.	.	300	.	.	.	.	.																						.	.	.	.	310	.	.													.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.																									.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.																									.
Query Sequence		G	G	G	T	G	W	N	W	L	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	L	Y	L	Q	P	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	P	L	Y	V	L	L	Y	A	S	A	I	I	F	F	C	F	F	Y	T	A	L	V	.	F	N	P	R
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.																									.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation
Template Sequence		S	A	R	F	S	G	N	L	L	V	S	L	L	G	T	W	S	D	T	S	S	G	G	P	A	R	A	Y	P	V	G	G	L	C	H	Y	L	S	P	P	E	S	F	G	S	V	L	E	D	P	V	H	A	V	V	Y	I	V	F	M	L	G	S	C	A	F	F	S	K	T	W	I	E	V	S	G	S	S	A	K
Template Known Secondary structure					T	S			S							S	S	S	T	T		S		T	T	S	S	S			S	S	S					T	S			S	S	S	S	S				S	S																						T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	A	D	N	L	K	K	S	G	A	F	V	P	G	I	R	P	G	E	Q	T	A	K	Y	I	D	K	V	M	T	R	L	T	L	V	G	A	L	Y	I	T	F	I	C	L	I	P	E	F	M	R	D	A	M	K	V	P	F	Y	F	G	G	T	S	L	L	I	V	V	V	V	I	M	D	F	M	A	Q	V
Query Conservation
Alig confidence																								.																														.	.	.	.	.	.
Template Conservation																								.																														.	.	.	.	.	.
Template Sequence		D	V	A	K	Q	L	K	E	Q	Q	M	V	M	R	G	H	R	E	T	S	M	V	.	H	E	L	N	R	Y	I	P	T	A	A	A	F	G	G	L	C	I	G	A	L	S	V	L	A	D	F	L	G	.	.	.	.	.	.	A	I	G	S	G	T	G	I	L	L	A	V	T	I	I	Y	Q	Y	F	E	I	F
Template Known Secondary structure												T	T	T					T	T	T	T	T	.																														.	.	.	.	.	.		S	S
Template Predicted Secondary structure																								.																														.	.	.	.	.	.
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.							440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
		421	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	L	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	E	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		462	.	.	.