Job Description P0AGA2 Confidence 100.00% Date Thu Jan 5 11:28:35 GMT 2012 Rank 8 Aligned Residues 396 % Identity 19% Template c2wwaA_ PDB info PDB header:ribosome Chain: A: PDB Molecule:sec sixty-one protein homolog; PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the2 yeast 80s ribosome Resolution 8.90 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	L	D	F	Q	S	A	K	G	G	L	G	E	L	K	R	R	L	L	F	V	I	G	A	L	I	V	F	R	I	G	S	F	I	P	I	P	G	I	D	A	A	V	L	A	K	L	L	E	Q	Q	R	G	T	I	I	E	M	F	N	M	F	S	G	G	A	L	S	R	A	S	I	F	A	L	G	I	M	P
Query Conservation
Alig confidence																.	.	.																.													.	.	.	.	.																	.	.
Template Conservation																.	.	.																.													.	.	.	.	.																	.	.
Template Sequence		P	E	V	E	L	P	F	E	K	L	P	F	D	D	.	.	.	K	I	V	Y	T	I	F	A	G	L	I	Y	L	F	A	.	Q	F	P	L	V	G	L	P	K	A	T	T	.	.	.	.	.	P	N	V	N	D	P	I	Y	F	L	R	G	V	F	G	C	.	.	E	P	R	T	L	L	E	F	G	L	F	P
Template Known Secondary structure													S			.	.	.												S	S			.	S	S			S		S	S	S	S	S	S	.	.	.	.	.	S		S	S	S			T	T	T					T		.	.		S	S	S	S		S	S	T	T
Template Predicted Secondary structure																.	.	.																.													.	.	.	.	.																	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.						.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.			.	.	.	.	.	80	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	S	A	S	I	I	I	Q	L	L	T	V	V	H	P	T	L	A	E	I	K	K	E	G	E	S	G	R	R	K	I	S	Q	Y	T	R	Y	G	T	L	V	L	A	I	F	Q	S	I	G	I	A	T	G	L	P	N	M	P	G	M	Q	G	L	V	I	N	P	G	F	A	F	Y	F	T	A	V	V	S	L
Query Conservation
Alig confidence													.	.																																												.	.	.	.	.	.	.
Template Conservation													.	.																																												.	.	.	.	.	.	.
Template Sequence		N	I	S	S	G	L	I	L	Q	L	L	.	.	A	G	L	K	V	I	K	V	N	F	K	I	Q	S	D	R	E	L	F	Q	S	L	T	K	V	F	A	I	V	Q	Y	V	I	L	T	N	I	F	I	F	A	G	Y	.	.	.	.	.	.	.	F	G	D	D	L	S	V	V	Q	I	G	L	I	N	F	Q	L
Template Known Secondary structure													.	.				T	S	S				T	T	S																										T	T	T	T	T	T	.	.	.	.	.	.	.	T	S				S	T	T
Template Predicted Secondary structure													.	.																																												.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140								.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																		.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	G	T	M	F	L	M	W	L	G	E	Q	I	T	E	.	R	G	I	G	N	G	I	S	I	I	I	F	A	G	I	V	A	G	L	P	P	A	I	A	H	T	I	E	Q	A	R	Q	G	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																		.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	A	G	I	F	T	T	L	L	A	E	V	I	D	K	G	F	G	F	S	S	G	A	M	I	I	N	T	V	V	I	A	T	N	L	V	A	D	T	F	G	V	S	Q	I	K	V	G	E	D	D	Q	T	E	A	Q	G	A	L	I	N	L	I	Q	G	L	R	S	K	H	K	T	F	I	G	G	I	I	S
Template Known Secondary structure			T	T	T												T	T	T	S	S	S								T	T											T									S	S			S	S	S																S	S				S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
						216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	H	F	L	V	L	L	L	V	A	V	L	V	F	A	V	T	F	F	V	V	F	V	E	R	G	Q	R	R	I	V	V	N	Y	A	K	R	Q	Q	G	R	R	V	Y	A	A	Q	S	T	H	L	P	L	K	V	N	M	A	G	V	I	P	A	I	F	A	S	S	I	I	L	F	P	A	T	I	A
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.
Template Sequence		A	F	N	R	D	Y	L	P	N	L	T	T	T	I	I	V	L	A	I	A	I	I	V	C	Y	L	Q	S	V	R	V	E	L	P	I	R	S	T	R	.	.	.	.	.	.	.	A	R	G	T	N	N	V	Y	P	I	K	L	L	Y	T	G	C	L	S	V	L	F	S	Y	T	I	L	F	Y	I	H	I	F	A
Template Known Secondary structure					S	S	S			S															S	S	T	T	T	S									S	S	.	.	.	.	.	.	.	S	S	S									S	T	T	T	S										G	G	G	T		S	S	S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.								.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		292	.	.	.	.																						.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.														.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		S	W	F	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	G	W	N	W	L	T	T	I	S	L	Y	L	Q	P	G	Q	P	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	V	L	L	Y	A	S	A	I	I	F	F	C	F	F	Y	T	A	L	V	.
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		F	V	L	I	Q	L	V	A	K	N	E	P	T	H	I	I	C	K	I	M	G	H	Y	E	N	A	N	N	L	L	A	V	P	T	F	P	L	S	L	L	A	P	P	T	S	F	F	K	G	V	T	Q	Q	P	L	T	F	I	T	Y	S	A	F	I	L	V	T	G	I	W	F	A	D	K	W	Q	A	I	S	G
Template Known Secondary structure		S	T	T	T						S				S	S	S		T	T	S	B			S			S	S	S	S		S		S	S	B	S			S	S					S	S	B				S		S																	T							S	S	S
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	P	R	E	T	A	D	N	L	K	K	S	G	A	F	V	P	G	I	R	P	G	E	Q	T	A	K	Y	I	D	K	V	M	T	R	L	T	L	V	G	A	L	Y	I	T	F	I	C	L	I	P	E	F	M	R	D	A	M	K	V	P	F	Y	F	G	G	T	S	L	L	I	V	V	V	V	I	M	D	F
Query Conservation
Alig confidence																										.																																.	.	.	.	.	.
Template Conservation																										.																																.	.	.	.	.	.
Template Sequence		S	S	A	R	D	V	A	L	E	F	K	D	Q	G	I	T	L	M	G	R	R	E	Q	N	.	V	A	K	E	L	N	K	V	I	P	I	A	A	V	T	G	A	S	V	L	S	L	I	T	V	I	G	E	S	L	G	.	.	.	.	.	.	L	K	G	K	A	A	G	I	V	V	G	I	A	G	G	F	S	L
Template Known Secondary structure		S															S	S	S	S						.	S	T	T	T	T	T	T	T	S					S	G	G	G	T	S												B	.	.	.	.	.	.			S	S	T	T	T	S	T	T	T	S	S	S	S
Template Predicted Secondary structure																										.																																.	.	.	.	.	.
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.		.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.							.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		417	.	.	420	.	.	.		.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		M	A	Q	V	Q	T	L	.	M	M	S	S	Q	Y	E	S	A	L	K
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		L	E	V	I	T	I	E	Y	Q	Q	S	G	G	Q	S	A	L	N	Q
Template Known Secondary structure												T	S	S	S		S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.