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Job DescriptionP77357
Confidence100.00%DateThu Jan 5 12:28:08 GMT 2012
Rank20Aligned Residues331
% Identity15%Templatec3khzA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:putative dipeptidase sacol1801; PDBTitle: crystal structure of r350a mutant of staphylococcus aureus2 metallopeptidase (sapep/dape) in the apo-form
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.. .......40.........50.........60.........70..
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Query Sequence  NQFVNSLAPKLSHWRRDFHHYAESGWVE. . . . . . . . . . . . FRTATLVAEELHQLGYSLALGREVVNESSRMGLPDEFTLQ
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Template Sequence  KEKVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVD. . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTTS

B

TTS

SSSTT
TT

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   3......10.........20.........30.........40.........50.........60....
 
   73......80.........90.........100.........110.........120.........130.........140.........150..
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Query Sequence  REFERARQQGALAQWIAAFEGGFTGIVATLDTGRPGPVMAFRVDMDALDLSEEQDVSHRPYRDGFASCNAGMMHACGHDG
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . HIAGRIEAGKGNDVLGILCHVDVVPAGD. . GWDSNPFEPVVTEDAIIARGTLDDKG
Template Known Secondary structure  ........................TT
SS


B



T..T
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TTS

SSSTTSTTT
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   65....70.........80.........90.. .......100.........110........
 
   153......160.........170.........180....... ..190.........200.........210.........220
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Query Sequence  HTAIGLGLAHTLKQFESGLHGVIKLIFQPAEEGTR. GARAMVDAGVVDDVDYFTAVHIGTGVPAGTVVC. . . . . . . . . . .
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Template Sequence  PTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWKCTDRYFKTE. . EMPTLGFAPDAEFPCIHGEKGITTFDLVQNKLT
Template Known Secondary structure  TT


SS

TT



TTSS..


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TT
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S


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   119120.........130.........140.........150.........160... ......170.........180.........190......
 
   221........230.........240........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GSDNFMATTKFDAHFTGTAAHAGAKPED
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Template Sequence  EDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQDFEYFLEQNHLQGDSTVDSGILVLTVEGKAVHG. MDPSI
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S
SSSB


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STT

TT
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BT.TS
TT
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   197..200.........210.........220.........230.........240.........250.........260.........270 .....
 
   249250.........260.... .....270.........280.........290.........300......
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Query Sequence  GHNALLAAAQATLALH. . . . . . . . . . . . . . . . . . . . . . AIAPHSEGASRVNVGVMQAGSGRNVVPASALLKVETRGASDV
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Template Sequence  GVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMGMKFHTDVMGDVTTNIGVITYDNENAGLFGINLAYPEGF
Template Known Secondary structure  SB
TTS
B
TTT
TTSGGGT


TTT
TTT
TT
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   276...280.........290.........300.........310.........320.........330.........340.........350.....
 
   307..310.........320.........330.........340.........350.........360.........370.........380......
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Query Sequence  INQYVFDRAQQAIQGAATMYGVGVETRLMGAATASSPSPQWVAWLQSQAAQVAGVNQAIERVEAPAGSEDATLMMARVQQ
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Template Sequence  EFEKAMDRFANEIQQY. . . . GFEVKLGKVQPPHYVDKNDPFVQKLVTAYRNQ. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
TGGG....T

B

GGG

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   356...360.........370. ........380.........390.........400...
 
   387..390.........400.........410.........420.........430.
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Query Sequence  HQGQASYVVFGTQLAAGHHNEKFDFDEQVLAIAVETLARTALNFP
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Template Sequence  . . . . . . . . . . . . . . . . . THQKNEYITKKQLFNATSIYLEAIYSLC
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   404.....410.........420.........430.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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