Job Description P77357 Confidence 100.00% Date Thu Jan 5 12:28:08 GMT 2012 Rank 13 Aligned Residues 362 % Identity 18% Template c3gb0A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:peptidase t; PDBTitle: crystal structure of aminopeptidase pept (np_980509.1) from bacillus2 cereus atcc 10987 at 2.04 a resolution Resolution 2.04 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	P	K	L	S	H	W	R	R	D	F	H	H	Y	A	E	S	G	W	V	E	F	R	T	A	T	L	V	A	E	E	L	H	Q	L	G	Y	S	L	A	L	G	R	E	V	V	N	E	S	S	R	M	G	L	P	D	E	F	T	L	Q	R	E	F	E	R	A	R	Q	Q	G	A	L	A	Q	W	I	A	A
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	Q	E	R	L	V	N	E	F	X	E	L	V	Q	V	D	S	E	T	K	F	E	A	E	I	C	K	V	L	T	K	K	F	T	D	L	G	V	E	V	F	E	D	D	T	X	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V
Template Known Secondary structure															T	S			B	T	T																T	T							S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.																																	50
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.					.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																				.																																								.	.	.	.
Query SS confidence																				.																																								.	.	.	.
Query Sequence		F	E	G	G	F	T	G	I	V	A	T	L	D	T	G	R	P	G	.	P	V	M	A	F	R	V	D	M	D	A	L	D	L	S	E	E	Q	D	V	S	H	R	P	Y	R	D	G	F	A	S	C	N	A	G	M	M	H	A	.	.	.	.	C	G	H	D	G	H	T	A	I	G	L	G	L	A	H	T	L	K
Query Conservation																				.																																								.	.	.	.
Alig confidence																				.																	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.
Template Sequence		T	G	H	G	A	G	N	L	I	C	T	L	P	A	T	K	D	G	V	D	T	I	Y	F	T	S	H	X	D	T	V	V	P	G	N	.	.	.	.	.	.	.	G	I	K	P	S	I	K	D	G	Y	I	V	S	D	G	T	T	I	L	G	A	D	D	K	A	G	L	A	S	X	F	E	A	I	R	V	L	K
Template Known Secondary structure					S	S										S	S	T	T												B		S	S		S	.	.	.	.	.	.	.	S							T	T						S	S	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.								.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		Q	F	E	S	G	L	H	G	V	I	K	L	I	F	Q	P	A	E	E	G	T	R	.	G	A	R	A	M	V	D	A	G	V	V	D	D	V	D	Y	F	T	A	V	H	I	G	T	G	V	P	A	G	T	V	V	C	G	S	D	N	F	M	A	T	T	K	F	D	A	H	F	T	G	T	A	A	H	A	G	A
Query Conservation																								.
Alig confidence						.																		.																			.	.	.	.	.	.	.
Template Conservation						.																																					.	.	.	.	.	.	.
Template Sequence		E	K	N	I	.	P	H	G	T	I	E	F	I	I	T	V	G	E	E	S	G	L	V	G	A	K	A	L	D	R	E	R	I	T	A	K	Y	G	Y	A	L	.	.	.	.	.	.	.	D	S	D	G	K	V	G	E	I	V	V	A	A	P	T	Q	A	K	V	N	A	I	I	R	G	K	T	A	H	A	G	V
Template Known Secondary structure			T	T		.											S		G	G	G	T	S						S		G	G	G				S						.	.	.	.	.	.	.				S		T	T																			B			B	T	T	T
Template Predicted Secondary structure						.																																					.	.	.	.	.	.	.
Template SS confidence
		124	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.								.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	E	D	G	H	N	A	L	L	A	A	A	Q	A	T	L	A	L	H	A	I	A	P	H	S	E	G	A	S	R	V	N	V	G	V	M	Q	A	G	S	G	R	N	V	V	P	A	S	A	L	L	K	V	E	T	R	G	A	S	D	V	I	N	Q	Y	V	F	D	R	A	Q	Q	A	I	Q	G	A	A	T
Query Conservation
Alig confidence																									.	.
Template Conservation																									.	.
Template Sequence		A	P	E	K	G	V	S	A	I	T	I	A	A	K	A	I	A	K	X	P	L	G	R	.	.	I	D	S	E	T	T	A	N	I	G	R	F	E	G	G	T	Q	T	N	I	V	C	D	H	V	Q	I	F	A	E	A	R	S	L	I	N	E	K	X	E	A	Q	V	A	K	X	K	E	A	F	E	T	T	A	K
Template Known Secondary structure			G	G	G	S	B											T	T	S					.	.			T	T												S		T	T	B														S	S
Template Predicted Secondary structure																									.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340			.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		M	Y	G	V	G	V	E	T	R	L	M	G	A	A	T	A	.	.	S	S	P	S	P	Q	W	V	A	W	L	Q	S	Q	A	A	Q	V	A	G	V	N	Q	A	I	E	R	V	E	A	P	A	G	S	E	D	A	T	L	M	M	A	R	V	Q	Q	H	Q	G	Q	A	S	Y	V	V	F	G	T	Q	L	A	A
Query Conservation																		.	.
Alig confidence																		.	.																				.	.	.	.																		.	.	.	.														.	.	.
Template Conservation																																							.	.	.	.																		.	.	.	.														.	.	.
Template Sequence		E	X	G	G	H	A	D	V	E	V	N	V	X	Y	P	G	F	K	F	A	D	G	D	H	V	V	E	V	A	K	R	A	A	E	K	I	G	.	.	.	.	R	T	P	S	L	H	Q	S	G	G	G	S	D	A	N	V	I	.	.	.	.	A	G	H	G	I	P	T	V	N	L	A	V	G	.	.	.	Y	E
Template Known Secondary structure			T	T																		T	T														T	T	.	.	.	.									S	S								.	.	.	.			T	T										.	.	.		B
Template Predicted Secondary structure																																							.	.	.	.																		.	.	.	.														.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310					.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.					.	.	330	.	.	.	.	.	.	.	.	.	340				.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	H	N	E	K	F	D	F	D	E	Q	V	L	A	I	A	V	E	T	L	A	R	T	A	L	N	F	P	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	H	T	T	N	E	K	I	P	V	E	E	L	A	K	T	A	E	L	V	V	A	I	I	E	E	V	A	K
Template Known Secondary structure		S	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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