Job Description P77357 Confidence 100.00% Date Thu Jan 5 12:28:08 GMT 2012 Rank 25 Aligned Residues 336 % Identity 17% Template c3ct9B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:acetylornithine deacetylase; PDBTitle: crystal structure of a putative zinc peptidase (np_812461.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.31 a resolution Resolution 2.31 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	S	L	A	P	K	L	S	H	W	R	R	D	F	H	H	Y	A	E	S	G	W	V	E	F	R	T	A	T	L	V	A	E	E	L	H	Q	L	G	Y	S	L	A	L	G	R	E	V	V	N	E	S	S	R	M	G	L	P	D	E	F	T	L	Q	R	E	F	E	R	A	R	Q	Q	G	A	L	A	Q	W
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	P	T	X	T	A	E	A	V	S	L	L	K	S	L	I	S	I	P	S	I	S	R	E	E	T	Q	A	A	D	F	L	Q	N	Y	I	E	A	E	G	X	Q	T	G	R	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																			S			B	T	T															T	T	T							T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	A	F	E	G	G	F	T	G	I	V	A	T	L	D	T	G	R	P	G	P	V	M	A	F	R	V	D	M	D	A	L	D	L	S	E	E	Q	D	V	S	H	R	P	Y	R	D	G	F	A	S	C	N	A	G	M	M	H	A	C	G	H	D	G	H	T	A	I	G	L	G	L	A	H	T	L	K	Q	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	N	N	V	W	C	L	S	P	X	F	D	K	P	T	I	L	L	N	S	H	I	D	T	V	K	.	.	.	.	.	.	P	V	K	D	P	F	T	P	R	E	E	N	G	K	L	Y	G	L	G	S	N	D	A	G	A	S	V	V	S	L	L	Q	V	F	L	Q	L	C	R	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	T							T	T														B			.	.	.	.	.	.					S	S						T	T					T	T	T	T	T	T															T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template SS confidence
											52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.							.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	G	L	H	G	V	I	K	L	I	F	Q	P	A	E	E	G	T	R	G	A	R	A	M	V	D	A	G	V	V	D	D	V	D	Y	F	T	A	V	H	I	G	T	G	V	P	A	G	T	V	V	C	G	S	D	N	F	M	A	T	T	K	F	D	A	H	F	T	G	T	A	A	H	A	G	A	K	P	E
Query Conservation
Alig confidence			.	.																																											.	.	.	.	.	.	.																								.
Template Conservation			.	.																																											.	.	.	.	.	.	.																								.
Template Sequence		S	.	.	Q	N	Y	N	L	I	Y	L	A	S	C	E	E	E	V	S	G	K	E	G	I	E	S	V	L	P	G	L	P	P	V	S	F	A	I	V	G	E	P	T	E	X	.	.	.	.	.	.	.	Q	P	A	I	A	E	K	G	L	X	V	L	D	V	T	A	T	G	K	A	G	H	A	.	A	R	D	E
Template Known Secondary structure			.	.		S	S										T	T	T	T		T	T	S	G	G	G	T	T	T	T	S				S								S	T	T	.	.	.	.	.	.	.																			B			B	T	.	T	S	S
Template Predicted Secondary structure			.	.																																											.	.	.	.	.	.	.																								.
Template SS confidence
		123			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.								.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.					.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence		D	G	H	N	A	L	L	A	A	A	Q	A	T	L	A	L	H	A	I	A	P	H	S	E	.	.	.	.	G	A	S	R	V	N	V	G	V	M	Q	A	G	S	G	R	N	V	V	P	A	S	A	L	L	K	V	E	T	R	G	A	S	D	V	I	N	Q	Y	V	F	D	R	A	Q	Q	A	I	Q	G	A	A
Query Conservation																										.	.	.	.
Alig confidence		.																								.	.	.	.
Template Conservation		.
Template Sequence		.	G	D	N	A	I	Y	K	V	L	N	D	I	A	W	F	R	D	Y	R	F	E	K	E	S	P	L	L	G	P	V	K	X	S	V	T	V	I	N	A	G	T	Q	H	N	V	V	P	D	K	C	T	F	V	V	D	I	R	S	N	E	L	Y	S	N	E	D	L	F	A	E	I	R	K	H	I	A	C	D	A
Template Known Secondary structure		.		B		T	T	G	G	G													S			B	T	T	T	B	S												S	S	T	T	B															T	T												T	T			S
Template Predicted Secondary structure		.
Template SS confidence
			193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	M	Y	G	V	G	V	E	T	R	L	M	G	A	A	T	A	S	S	P	S	P	Q	W	V	A	W	L	Q	S	Q	A	A	Q	V	A	G	V	N	Q	A	I	E	R	V	E	A	P	A	G	S	E	D	A	T	L	M	M	A	R	V	Q	Q	H	Q	G	Q	A	S	Y	V	V	F	G	T	Q	L	A	A	G
Query Conservation
Alig confidence									.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.								.	.
Template Conservation									.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.								.	.
Template Sequence		K	A	R	S	F	R	L	.	.	.	.	.	.	N	S	S	R	I	D	E	K	H	P	F	V	Q	K	A	V	K	X	G	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	P	F	G	S	P	T	L	S	D	Q	.	.	.	.	A	L	X	S	F	A	S	.	.	V	K	I	G	P	G	R	S	S	R
Template Known Secondary structure				S		S			.	.	.	.	.	.							T	T	S									T	T			.	.	.	.	.	.	.	.	.	.	.	.	.						S			G	G	.	.	.	.	G	G			S			.	.					S	S		G	G	G
Template Predicted Secondary structure									.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.								.	.
Template SS confidence
		272	.	.	.	.	.	.							.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.														300	.	.	.	.	.	.	.	.	.					310	.	.	.	.	.	.			.	.	.	320	.	.	.	.	.	.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	H	N	E	K	F	D	F	D	E	Q	V	L	A	I	A	V	E	T	L	A	R	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	H	T	A	E	E	Y	I	X	L	K	E	I	E	E	A	I	G	I	Y	L	D	L	L
Template Known Secondary structure		T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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