 |
Job Description | P77357 | Confidence | 94.69% | Date | Thu Jan 5 12:28:08 GMT 2012 |
Rank | 85 | Aligned Residues | 87 |
% Identity | 13% | Template | c2glfB_ |
PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:probable m18-family aminopeptidase 1; |
PDBTitle: crystal structure of aminipeptidase (m18 family) from thermotoga2 maritima
|
Resolution | 2.80 Å |
|
 |
  |   |
336 | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | |
|
. | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | A | A | T | A | S | S | P | S | P | Q | W | V | A | W | L | Q | S | Q | A | A | Q | V | A | G | V | N | Q | A | I | E | . |
. |
R | V | E | A | P | A | G | S | E | D | A | T | L | M | M | A | R | V | Q | Q | H | Q | G | Q | A | S | Y | V | V | F | G | T | Q | L | A | A | G | H | H | N | E | K | F | D | F | D | E |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   | . | . |   |   |   |   |   |   |
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|   |   |   |   |   |
|   |
|   |
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|
|   |
|   |   |   |   |   |
|   |
|   |   |   |
|
|
|
|
|   |   |   |
| . | . | . | . |   |   |
|
|   |
|
|
|
|
|
|
|   |
|   | . | . | . |
|
|
|   |
|
|   |   |   |   |
Template Sequence |   |
G | K | Y | S | T | N | D | A | H | A | E | F | V | A | R | V | R | K | V | L | N | E | Q | G | V | I | W | Q | V | A | T | L | G | K | V | D | Q | G | G | G | G | T | I | A | K | F | F | A | . |
. |
. |
. |
E | R | G | S | D | V | I | D | X | G | P | A | L | L | G | . |
. |
. |
X | H | S | P | F | E | I | S | S | K |
Template Known Secondary structure |   |
T | T | T | T |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |
|
| S | S | S | T | T | S |
|
|
|
|
| T |  |  |  |  |  | . | . | . | . | T | T | T |
|  |  |  |  |  |  |
|  |  | B | S | . | . | . | T | T | S | S | S |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  | . | . | . | . |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
| . | . | . |
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
363 | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | |
|
|
|
. | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | |
|
|
. | . | . | . | 430 | . | . | . | . | . |
  |
  |   |
414 | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | V | L | A | I | A | V | E | T | L | A | R | T | A | L | N |
Query Conservation |   |
  |   |
|   |   |   |   |   |
|   |   |   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |   |   |
|   |   |
|
|   |
|   |
Template Sequence |   |
A | D | L | F | E | T | Y | V | A | Y | R | S | L | X | E | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
436 | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|