Job Description P0A8Y1 Confidence 97.32% Date Thu Jan 5 11:08:57 GMT 2012 Rank 125 Aligned Residues 131 % Identity 14% Template c2ia5C_ PDB info PDB header:transferase Chain: C: PDB Molecule:polynucleotide kinase; PDBTitle: t4 polynucleotide kinase/phosphatase with bound sulfate and2 magnesium. Resolution 2.90 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	W	I	F	F	D	A	D	E	T	L	F	T	F	D	S	F	T	G	L	Q	R	M	F	L	D	Y	S	V	T	F	T	A	E	D	F	Q	D	Y	Q	A	V	N	K	P	L	W	V	D	Y	Q	N	G	A	I	T	S	L	Q	L	Q	H	G	R	F	E	S	W	A	E	R	L	N	V	E	P	G	K	L	N
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	A	V	I	F	D	V	D	G	T	L	A	K	M	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	B	T	T	T	B				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.									.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.
Query Sequence		E	A	F	I	N	A	M	A	E	I	C	T	P	L	P	G	A	V	S	L	L	N	A	I	R	G	N	A	K	I	G	I	I	T	N	G	F	S	A	L	Q	Q	V	R	L	E	R	T	G	L	R	.	.	.	.	.	.	.	.	D	Y	F	D	L	L	V	I	S	E	E	V	G	V	A	K	P	N	K	K	I
Query Conservation																																																					.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	P	Y	D	L	E	K	C	D	T	D	V	I	N	P	M	V	V	E	L	S	K	M	Y	A	L	M	G	Y	Q	I	V	V	V	S	G	R	E	S	G	T	K	E	D	P	T	K	Y	Y	R	M	T	R	K	W	V	E	D	I	A	G	V	P	L	V	M	Q	C	Q	R	E	Q	G	D	T	R	K	D	D	V
Template Known Secondary structure						T	T				S	T	T	B													T	T	T									S					S	S		T	T											T	T	T	T												S	S			S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	Y	A	L	E	Q	A	G	N	P	D	R	S	R	V	L	M	V	G	D	T	A	E	S	D	I	L	G	G	I	N	A	G	L	A	T	C	W	L	N	A	H	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	E	E	I	F	W	K	H	I	A	P	H	F	D	V	K	L	A	I	D	D	R	T	Q	V	V	E	M	W	R	R	I	G	V	E	C	W	Q	V	A	S	G	D
Template Known Secondary structure											T	T	T	T																				T	T							S
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions