Job Description P77806 Confidence 99.82% Date Thu Jan 5 12:33:00 GMT 2012 Rank 217 Aligned Residues 344 % Identity 17% Template d2v1pa1 SCOP info PLP-dependent transferase-like PLP-dependent transferases Beta-eliminating lyases Resolution 1.9

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	L	A	Q	Q	H	Q	A	I	N	L	S	Q	G	F	P	D	F	D	G	P	R	Y	L	Q	E	R	L	A	H	H	V	A	Q	G	A	N	Q	Y	A	P	M	T	G	V	Q	A	L	R	E	A	I	A	Q	K	T	E	R	L	Y	G	Y	Q	P	D	A	D	S	D	I	T	V	T	A	G	A	T	E	A
Query Conservation
Alig confidence																																.	.	.	.																							.	.	.	.					.	.	.	.	.
Template Conservation																																.	.	.	.																							.	.	.	.					.	.	.	.	.
Template Sequence		F	L	L	D	S	E	D	V	F	I	D	L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	.	.	.	.	R	G	D	E	A	F	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	.	.	.	.	F	G	Y	Q	.	.	.	.	.	Y	T	I	P	T	H	Q	G	R	G	A
Template Known Secondary structure		G	G	S		G	G	G		S				S			T	T		S										T	T	.	.	.	.	S					S	S	S															.	.	.	.	T			S	.	.	.	.	.							S	S	T	T	T
Template Predicted Secondary structure																																.	.	.	.																							.	.	.	.					.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90					.	.	.	.						.	.	.	.	.	100	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.										.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.										.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.																.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.																.	.	.
Query Sequence		L	Y	A	A	I	T	A	L	V	R	N	G	D	E	.	.	.	.	.	.	.	.	.	V	I	C	F	D	P	S	Y	D	S	Y	A	P	A	I	A	L	S	G	G	I	V	K	R	M	A	L	Q	P	P	.	.	.	.	.	.	.	.	.	H	F	R	V	D	W	Q	E	F	A	A	L	L	S	E	.	.	.
Query Conservation																.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.																.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation
Template Sequence		E	Q	I	Y	I	P	V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P
Template Known Secondary structure																					T	T	T						S	S												T	T							B		T	T	T	T		T	T	S			T	T	T	T		B														G
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
			163	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.											.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure		.															.																													.	.	.	.	.	.	.	.	.	.
Query SS confidence		.															.																													.	.	.	.	.	.	.	.	.	.
Query Sequence		.	R	T	R	L	V	I	L	N	T	P	H	N	P	S	.	A	T	V	W	Q	Q	A	D	F	A	A	L	W	Q	A	I	A	G	H	E	I	F	V	I	S	D	E	V	.	.	.	.	.	.	.	.	.	.	Y	E	H	I	N	F	S	Q	Q	G	H	A	S	V	L	A	H	P	Q	L	R	E	R	A	V	A
Query Conservation		.															.																													.	.	.	.	.	.	.	.	.	.
Alig confidence		.															.																													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A
Template Known Secondary structure		G	G								S	S	B		G	G	G		B																	T	T								T	T													G	G	G	T	T	S										G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.								.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.
Query Sequence		V	S	S	F	G	K	T	Y	H	M	T	G	W	K	V	G	Y	C	V	A	P	A	P	I	S	A	E	I	R	K	V	H	Q	Y	L	T	.	.	.	.	.	.	.	F	S	V	N	T	P	A	Q	L	A	L	A	D	M	L	R	A	E	P	E	H	Y	L	A	L	P	D	F	Y	R	Q	K	R	D	I	L	V
Query Conservation																																						.	.	.	.	.	.	.
Alig confidence			.								.																											.	.	.	.	.	.	.																					.	.
Template Conservation			.								.																																																						.	.
Template Sequence		M	.	S	A	K	K	D	A	M	.	V	P	M	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	.	.	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V
Template Known Secondary structure			.		S	S	S	T	T		.		S	S								S	G	G	G													T	T	S	S																					T	T		.	.
Template Predicted Secondary structure			.								.																																																						.	.
Template SS confidence
		266		.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.					.	.	.	.	330	.			.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.										.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.							.	.																												.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.							.	.																												.	.	.	.	.	.	.	.	.
Query Sequence		N	A	L	N	E	S	R	L	E	I	L	P	C	E	G	T	Y	F	L	L	V	D	.	.	.	.	Y	S	A	V	S	T	.	.	L	D	D	V	E	F	C	Q	W	L	T	Q	E	H	G	V	A	A	I	P	L	S	V	F	C	A	D	.	.	.	.	.	.	.	.	.	P	F	P	H	K	L	I	R	L	C
Query Conservation																								.	.	.	.							.	.																												.	.	.	.	.	.	.	.	.
Alig confidence										.	.													.	.	.	.							.	.																												.	.	.	.	.	.	.	.	.
Template Conservation										.	.
Template Sequence		D	G	L	E	E	I	G	V	.	.	V	Q	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T
Template Known Secondary structure							T	T		.	.						S	S										S	T	T	S		G	G	G																						S						B		T	T	T		S	B				S
Template Predicted Secondary structure										.	.
Template SS confidence
		343	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		369	370	.				.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence		F	A	K	.	.	.	K	E	S	T	L	L	A	A	A	E	R	L	R	Q	L
Query Conservation					.	.	.
Alig confidence					.	.	.
Template Conservation
Template Sequence		I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V
Template Known Secondary structure				T	T	T
Template Predicted Secondary structure
Template SS confidence
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions