Phyre 2 alignment of P77806 with d1gc0a

Job Description P77806
Confidence 99.95% Date Thu Jan 5 12:33:00 GMT 2012

Rank 135 Aligned Residues 297

% Identity 16% Template d1gc0a_

SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like

Resolution 1.70

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure
Query SS confidence
Query Sequence	N	Q	Y	A	P	M	T	G	V	Q	A	L	R	E	A	I	A	Q	K	T	E	R	L	Y	G	Y	Q	P	D	A	D	S	D	I	T	V	T	A	G	A	T	E	A	L	Y	A	A	I	T	A	L	V	R	N	G	D	E	V	I	C	F	D	P	S	Y	D	S	Y	A	P	A	I	A	L	S	G	G	I	V	K
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.
Template Sequence	F	T	F	P	S	N	P	T	L	N	L	L	E	A	R	M	A	S	L	E	G	G	E	.	.	.	.	.	.	.	.	.	A	G	L	A	L	A	S	G	M	G	A	I	T	S	T	L	W	T	L	L	R	P	G	D	E	V	L	L	G	N	T	L	Y	G	C	T	F	A	F	L	H	H	G	I	G	E	F	G
Template Known Secondary structure																					T		S	.	.	.	.	.	.	.	.	.						S	S															T	T							S	S			S									T	G	G	G	G	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.
Template SS confidence
	38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60										.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.

	141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence	R	M	A	L	Q	P	P	H	F	R	V	D	W	Q	E	F	A	A	L	L	S	E	R	T	R	L	V	I	L	N	T	P	H	N	P	S	A	T	V	W	Q	Q	A	D	F	A	A	L	W	Q	A	I	A	G	H	E	I	F	V	I	S	D	E	V	Y	E	H	I	N	F	S	Q	Q	G	H	A	S	V	L	A
Query Conservation
Alig confidence								.	.																																	.	.	.																								.	.	.	.	.	.	.	.	.
Template Conservation								.	.																																	.	.	.																								.	.	.	.	.	.	.	.	.
Template Sequence	V	K	L	R	H	V	D	.	.	M	A	D	L	Q	A	L	E	A	A	M	T	P	A	T	R	V	I	Y	F	E	S	P	A	N	P	N	M	H	M	A	D	.	.	.	I	A	G	V	A	K	I	A	R	K	H	G	A	T	V	V	V	D	N	T	Y	C	T	.	.	.	.	.	.	.	.	.	P	Y	L	Q
Template Known Secondary structure								.	.	T	T											T	T								S	S		T	T	T						.	.	.									G	G	G	T								T	T	T		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.																																	.	.	.																								.	.	.	.	.	.	.	.	.
Template SS confidence
	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.				.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.										.	.	.	.

	221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence	H	P	Q	L	R	E	R	A	V	A	V	S	S	F	G	K	T	Y	H	M	T	G	W	K	V	G	Y	C	V	A	P	A	P	I	S	A	E	I	R	K	V	H	Q	Y	L	T	F	S	V	N	T	P	A	Q	L	A	L	A	D	M	L	R	A	E	P	E	H	Y	L	A	L	P	D	F	Y	R	Q	K	R	D
Query Conservation
Alig confidence																																																															.	.
Template Conservation																																																															.	.
Template Sequence	R	P	L	E	L	G	A	D	L	V	V	H	S	A	T	Y	L	S	G	H	G	D	I	T	A	G	I	V	V	G	S	Q	A	L	V	D	R	I	R	L	Q	G	L	K	D	M	T	G	A	V	L	S	P	H	D	A	A	L	L	M	R	G	.	.	I	K	T	L	N	L	R	M	D	R	H	C	A	N	A	Q
Template Known Secondary structure		G	G	G	G	T		S										S		S	S	S																			T						T																.	.		T	T
Template Predicted Secondary structure																																																															.	.
Template SS confidence
	196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

	301	.	.	.	.	.	.	.	.	310			.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.																				.	.	.	.
Predicted Secondary structure											.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	I	L	V	N	A	L	N	E	S	R	.	.	L	E	I	L	P	C	E	G	T	Y	F	L	L	V	D	Y	S	A	V	S	T	L	D	D	V	E	F	C	Q	W	L	T	Q	E	H	G	V	A	A	I	P	L	S	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	A	D	P
Query Conservation											.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.																			.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.
Template Sequence	V	L	A	E	F	L	A	R	Q	P	Q	V	E	L	I	H	Y	P	Q	P	G	G	M	I	A	F	E	L	K	G	.	.	G	I	G	A	G	R	R	F	M	N	A	L	Q	L	F	S	R	A	V	S	L	G	D	A	E	S	L	A	Q	H	P	A	S	M	T	H	S	S	Y	T	P	E	E	R	A	H	Y	G
Template Known Secondary structure								T		T	T										T	T							T	T	.	.													S	S	S				S			S		S	S						G	G	G	T	T	T	S	S	S								T	T
Template Predicted Secondary structure																															.	.
Template SS confidence
	275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.			.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

	360	.	.	.	.	.	.	.	.	.	370			.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence	F	P	H	K	L	I	R	L	C	F	A	.	.	K	K	E	S	T	L	L	A	A	A	E	R	L	R
Query Conservation												.	.
Alig confidence												.	.
Template Conservation
Template Sequence	I	S	E	G	L	V	R	L	S	V	G	L	E	D	I	D	D	L	L	A	D	V	Q	Q	A	L	K
Template Known Secondary structure			T	T								S	S
Template Predicted Secondary structure
Template SS confidence
	369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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