Phyre 2 alignment of P77806 with d1b5pa

Job Description P77806
Confidence 100.00% Date Thu Jan 5 12:33:00 GMT 2012

Rank 23 Aligned Residues 369

% Identity 29% Template d1b5pa_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 1.80

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.						.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																						.	.	.	.	.
Query SS confidence																						.	.	.	.	.
Query Sequence	P	Q	S	K	L	P	Q	L	G	T	T	I	F	T	Q	M	S	A	L	A	Q	.	.	.	.	.	Q	H	Q	A	I	N	L	S	Q	G	F	P	D	F	D	G	P	R	Y	L	Q	E	R	L	A	H	H	V	A	Q	G	A	N	Q	Y	A	P	M	T	G	V	Q	A	L	R	E	A	I	A	Q	K	T	E	R
Query Conservation																						.	.	.	.	.
Alig confidence																						.	.	.	.	.
Template Conservation
Template Sequence	L	S	R	R	V	Q	A	M	K	P	S	A	T	V	A	V	N	A	K	A	L	E	L	R	R	Q	G	V	D	L	V	A	L	T	A	G	E	P	D	F	D	T	P	E	H	V	K	E	A	A	R	R	A	L	A	Q	G	K	T	K	Y	A	P	P	A	G	I	P	E	L	R	E	A	L	A	E	K	F	R	R
Template Known Secondary structure																										T	T									S	S		S	S																T	T			S				T	T
Template Predicted Secondary structure
Template SS confidence
	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.

	83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence	L	Y	G	Y	Q	P	D	A	D	S	D	I	T	V	T	A	G	A	T	E	A	L	Y	A	A	I	T	A	L	V	R	N	G	D	E	V	I	C	F	D	P	S	Y	D	S	Y	A	P	A	I	A	L	S	G	G	I	V	K	R	M	A	L	Q	P	P	H	.	F	R	V	D	W	Q	E	F	A	A	L	L	S
Query Conservation																																																																			.
Alig confidence										.																																																									.
Template Conservation										.
Template Sequence	E	N	G	L	S	V	T	P	E	.	E	T	I	V	T	V	G	G	S	Q	A	L	F	N	L	F	Q	A	I	L	D	P	G	D	E	V	I	V	L	S	P	Y	W	V	S	Y	P	E	M	V	R	F	A	G	G	V	V	V	E	V	E	T	L	P	E	E	G	F	V	P	D	P	E	R	V	R	R	A	I	T
Template Known Secondary structure	T	T						G	G	.	G					S																T	T								S			T									T	T										G	G	G	T	T									T	T
Template Predicted Secondary structure										.
Template SS confidence
	84	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.

	162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	R	T	R	L	V	I	L	N	T	P	H	N	P	S	A	T	V	W	Q	Q	A	D	F	A	A	L	W	Q	A	I	A	G	H	E	I	F	V	I	S	D	E	V	Y	E	H	I	N	F	S	Q	Q	G	H	A	S	V	L	A	H	P	Q	L	R	E	R	A	V	A	V	S	S	F	G	K	T	Y	H	M	T
Query Conservation
Alig confidence																																																					.	.	.
Template Conservation																																																					.	.	.
Template Sequence	P	R	T	K	A	L	V	V	N	S	P	N	N	P	T	G	A	V	Y	P	K	E	V	L	E	A	L	A	R	L	A	V	E	H	D	F	Y	L	V	S	D	E	I	Y	E	H	L	L	Y	E	G	E	.	.	.	H	F	S	P	G	R	V	A	P	E	H	T	L	T	V	N	G	A	A	K	A	F	A	M	T
Template Known Secondary structure	T	T								S	S		T	T	T																			T	T								T	T	T	T		B	S	S	S		.	.	.				G	G	G	T		T	T	T							S	T	T	T	T	T		G
Template Predicted Secondary structure																																																					.	.	.
Template SS confidence
	163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

	242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.				.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.
Query SS confidence																																														.	.	.
Query Sequence	G	W	K	V	G	Y	C	V	A	P	A	P	I	S	A	E	I	R	K	V	H	Q	Y	L	T	F	S	V	N	T	P	A	Q	L	A	L	A	D	M	L	R	A	E	P	E	.	.	.	H	Y	L	A	L	P	D	F	Y	R	Q	K	R	D	I	L	V	N	A	L	N	E	S	R	L	E	I	L	P	C	E	G
Query Conservation																																														.	.	.
Alig confidence																																														.	.	.
Template Conservation
Template Sequence	G	W	R	I	G	Y	A	C	G	P	K	E	V	I	K	A	M	A	S	V	S	R	Q	S	T	T	S	P	D	T	I	A	Q	W	A	T	L	E	A	L	T	N	Q	E	A	S	R	A	F	V	E	M	A	R	E	A	Y	R	R	R	R	D	L	L	L	E	G	L	T	A	L	G	L	K	A	V	R	P	S	G
Template Known Secondary structure	G	G																					T	T	T		S																																													T			B				S	B
Template Predicted Secondary structure
Template SS confidence
	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

	319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	Y	F	L	L	V	D	Y	S	A	V	S	T	L	D	D	V	E	F	C	Q	W	L	T	Q	E	H	G	V	A	A	I	P	L	S	V	F	C	A	D	P	F	P	H	K	L	I	R	L	C	F	A	K	K	E	S	T	L	L	A	A	A	E	R	L	R	Q	L
Query Conservation
Alig confidence											.	.																											.	.	.	.
Template Conservation											.	.																											.	.	.	.
Template Sequence	A	F	Y	V	L	M	D	T	S	P	.	.	I	A	P	D	E	V	R	A	A	E	R	L	L	E	A	G	V	A	V	V	P	G	T	D	F	A	.	.	.	.	A	F	G	H	V	R	L	S	Y	A	T	S	E	E	N	L	R	K	A	L	E	R	F	A	R	V
Template Known Secondary structure	T	T							T	T	.	.	T		S	S											T	T						S	G	G	G	T	.	.	.	.		T	T								S												G	G	G	G
Template Predicted Secondary structure											.	.																											.	.	.	.
Template SS confidence
	320	.	.	.	.	.	.	.	.	.			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.					.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions