Phyre 2 alignment of P77806 with c3t18D

Job Description P77806
Confidence 100.00% Date Thu Jan 5 12:33:00 GMT 2012

Rank 44 Aligned Residues 365

% Identity 19% Template c3t18D_

PDB info PDB header:transferase Chain: D: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548.

Resolution 2.86 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.								.	30	.	.	.	.	.	.	.	.						.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																										.	.	.	.	.	.	.											.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.											.	.	.	.	.
Query Sequence	N	P	L	I	P	Q	S	K	L	P	Q	L	G	T	T	I	F	T	Q	M	S	A	L	A	Q	.	.	.	.	.	.	.	Q	H	Q	A	I	N	L	S	Q	G	.	.	.	.	.	F	P	D	F	D	G	P	R	Y	L	Q	E	R	L	A	H	H	V	A	Q	G	A	N	Q	Y	A	P	M	T	G	V	Q	A
Query Conservation																										.	.	.	.	.	.	.											.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.											.	.	.	.	.
Template Conservation
Template Sequence	X	P	X	T	I	K	R	A	T	W	N	N	G	P	D	L	A	F	D	I	N	N	K	A	N	A	A	I	E	K	Y	G	R	E	A	V	I	N	A	A	L	G	T	L	L	D	D	K	G	K	I	I	A	L	P	S	V	Y	D	R	L	D	E	X	D	R	S	H	I	A	S	Y	A	P	I	E	G	E	K	D
Template Known Secondary structure			S	S		T	T	T																									G	G	G						S				B		T	T	S		B												T	S		G	G	G	T	S	S				T	T
Template Predicted Secondary structure
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	R	E	A	I	A	Q	K	T	E	R	L	Y	G	Y	Q	P	D	A	D	S	D	I	T	V	T	A	G	A	T	E	A	L	Y	A	A	I	T	A	L	V	R	N	G	D	E	V	I	C	F	D	P	S	Y	D	S	Y	A	P	A	I	A	L	S	G	G	I	V	K	R	M	A	L	Q	P	P	H	F	R	V
Query Conservation
Alig confidence																	.	.
Template Conservation																	.	.
Template Sequence	Y	R	K	I	V	I	D	T	L	F	G	P	Y	K	P	E	.	.	G	Y	I	S	A	I	A	T	P	G	G	T	G	A	I	R	S	A	I	F	S	Y	L	D	E	G	D	P	L	I	C	H	D	Y	Y	W	A	P	Y	R	K	I	C	E	E	F	G	R	N	F	K	T	F	E	F	F	T	D	D	F	A	F
Template Known Secondary structure											G	G	G			S	.	.	S								S													T	S		S	S							S	S			T										T									B		S	S	S	S	B
Template Predicted Secondary structure																	.	.
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

	152	.	.	.	.	.	.	.	160	.	.							.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.							.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.																																	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.																																	.	.	.	.	.	.
Query Sequence	D	W	Q	E	F	A	A	L	L	S	E	.	.	.	.	.	.	R	T	R	L	V	I	L	N	T	P	H	N	P	S	A	T	V	W	Q	Q	A	D	F	A	A	L	W	Q	A	I	A	G	.	.	.	.	.	.	H	E	I	F	V	I	S	D	E	V	Y	E	H	I	N	F	S	Q	Q	G	H	A	S	V	L
Query Conservation												.	.	.	.	.	.																																	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.																																	.	.	.	.	.	.
Template Conservation
Template Sequence	N	I	D	V	Y	K	E	A	I	D	E	G	I	R	D	S	D	R	I	A	S	L	I	N	S	P	G	N	N	P	T	G	Y	S	L	S	D	E	E	W	D	E	V	I	T	F	L	K	E	K	A	E	D	K	D	K	K	I	T	L	I	V	D	V	A	Y	L	E	F	A	G	D	G	D	Q	Q	R	K	F	F
Template Known Secondary structure															S		S									S	S		T	T	T														T	T	T	T	T	T	T	T	S	T	T										T	T		T	T	S	S	S	S	S	S	S	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

	220	.	.	.	.	.	.	.				.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.								.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure									.	.	.																									.	.	.	.	.	.	.																																		.	.	.	.	.
Query SS confidence									.	.	.																									.	.	.	.	.	.	.																																		.	.	.	.	.
Query Sequence	A	H	P	Q	L	R	E	R	.	.	.	A	V	A	V	S	S	F	G	K	T	Y	H	M	T	G	W	K	V	G	Y	C	V	A	P	.	.	.	.	.	.	.	A	P	I	S	A	E	I	R	K	V	H	Q	Y	L	T	F	S	V	N	T	P	A	Q	L	A	L	A	D	M	L	R	A	E	.	.	.	.	.
Query Conservation									.	.	.																									.	.	.	.	.	.	.																																		.	.	.	.	.
Alig confidence									.	.	.																									.	.	.	.	.	.	.																																		.	.	.	.	.
Template Conservation
Template Sequence	E	K	F	S	N	L	P	R	N	L	F	V	V	V	A	F	S	X	S	K	S	H	T	A	Y	G	L	R	S	G	A	A	V	G	I	S	S	S	K	E	I	I	E	E	F	E	A	S	L	A	H	S	A	R	C	N	W	S	N	G	T	H	A	A	Q	N	I	L	I	E	L	E	R	A	E	N	K	K	I	Y
Template Known Secondary structure	G	G	G	S	S			T	T														T		G	G	G										S																				T	S	S							T	T	T	S	S	T	T	S	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
	239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

	285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	E	H	Y	L	A	L	P	D	F	Y	R	Q	K	R	D	I	L	V	N	A	L	N	E	S	R	L	E	I	L	P	C	E	G	T	Y	F	L	L	V	D	Y	S	A	V	S	T	L	D	D	V	E	F	C	Q	W	L	T	Q	E	H	G	V	A	A	I	P	L	S	V	F	C	A	D	P	F	P	H	K	L
Query Conservation
Alig confidence																																												.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Sequence	E	Q	E	L	V	D	L	R	N	X	L	K	S	R	A	D	V	F	V	T	A	A	K	E	N	K	L	T	X	I	P	Y	F	G	G	F	F	T	F	I	P	T	D	.	.	.	.	.	.	K	A	F	D	I	V	K	D	L	E	K	E	N	I	F	T	I	P	S	A	K	G	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																										T								S	S	S							S	.	.	.	.	.	.											T	T	T							S	S		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																												.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template SS confidence
	319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.							.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

	365	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence	I	R	L	C	F	A	K	.	K	E	S	T	L	L	A	A	A	E	R	L	R	Q
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence	I	R	V	A	I	C	G	V	G	E	E	K	I	P	K	L	V	Q	R	L	A	F
Template Known Secondary structure					S	T	T	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
	384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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