Phyre 2 alignment of P77806 with c3rq1A

Job Description P77806
Confidence 100.00% Date Thu Jan 5 12:33:00 GMT 2012

Rank 50 Aligned Residues 367

% Identity 16% Template c3rq1A_

PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.							.	30	.	.	.	.	.	.	.	.						.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																											.	.	.	.	.	.											.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.											.	.	.	.	.
Query Sequence	N	N	P	L	I	P	Q	S	K	L	P	Q	L	G	T	T	I	F	T	Q	M	S	A	L	A	Q	.	.	.	.	.	.	Q	H	Q	A	I	N	L	S	Q	G	.	.	.	.	.	F	P	D	F	D	G	P	R	Y	L	Q	E	R	L	A	H	H	V	A	Q	G	A	N	Q	Y	A	P	M	T	G	V	Q	A
Query Conservation																											.	.	.	.	.	.											.	.	.	.	.
Alig confidence																											.	.	.	.	.	.											.	.	.	.	.
Template Conservation
Template Sequence	T	S	V	A	A	K	H	A	K	G	K	K	L	K	D	V	I	F	V	T	A	G	Q	A	Q	A	D	A	K	E	N	G	R	E	N	V	V	N	G	T	L	G	A	I	H	D	E	E	G	N	L	V	F	L	K	T	V	K	E	E	Y	L	S	L	S	D	S	E	H	V	G	Y	A	P	I	A	G	I	P	D
Template Known Secondary structure				S		T	T	T	T	T																							G	G	G						S	S			B		T	T	S		B												T								S				T	T
Template Predicted Secondary structure
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	R	E	A	I	A	Q	K	T	E	R	L	Y	G	Y	Q	P	D	A	D	S	D	I	T	V	T	A	G	A	T	E	A	L	Y	A	A	I	T	A	L	V	R	N	G	D	E	V	I	C	F	D	P	S	Y	D	S	Y	A	P	A	I	A	L	S	G	G	I	V	K	R	M	A	L	Q	P	P	H	F	R	V
Query Conservation
Alig confidence																.	.
Template Conservation																.	.
Template Sequence	F	L	C	A	A	E	K	E	C	F	G	N	F	R	P	.	.	E	G	H	I	R	S	I	A	T	A	G	G	T	G	G	I	H	H	L	I	H	N	Y	T	E	P	G	D	E	V	L	T	A	D	W	Y	W	G	A	Y	R	V	I	C	S	D	T	G	R	T	L	V	T	Y	S	L	F	D	E	H	N	N	F
Template Known Secondary structure											G	G	G			.	.	S	S								S														S		T	T							S	S			T									T	T								S	B		T	T	S	S	B
Template Predicted Secondary structure																.	.
Template SS confidence
	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.

	152	.	.	.	.	.	.	.	160							.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.							.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.																																		.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.																																		.	.	.	.	.	.
Query Sequence	D	W	Q	E	F	A	A	L	L	.	.	.	.	.	.	S	E	R	T	R	L	V	I	L	N	T	P	H	N	P	S	A	T	V	W	Q	Q	A	D	F	A	A	L	W	Q	A	I	A	.	.	.	.	.	.	G	H	E	I	F	V	I	S	D	E	V	Y	E	H	I	N	F	S	Q	Q	G	H	A	S	V	L
Query Conservation										.	.	.	.	.	.																																		.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.																																		.	.	.	.	.	.
Template Conservation
Template Sequence	N	H	E	A	F	Q	N	R	V	N	E	L	A	A	K	Q	T	N	V	V	V	I	F	N	T	P	G	N	N	P	T	G	Y	S	I	E	D	K	D	W	D	S	I	L	N	F	L	K	D	L	V	A	I	G	R	N	N	V	I	I	G	I	D	V	A	Y	L	D	Y	S	G	E	K	D	E	V	R	A	F	F
Template Known Secondary structure																	S									S	S		T	T	T																						T	S	S										T	T	G	G	G	S	S							G	G	G
Template Predicted Secondary structure
Template SS confidence
	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

	220	.	.	.	.	.	.	.				.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.								.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure									.	.	.																									.	.	.	.	.	.	.																																		.	.	.	.	.
Query SS confidence									.	.	.																									.	.	.	.	.	.	.																																		.	.	.	.	.
Query Sequence	A	H	P	Q	L	R	E	R	.	.	.	A	V	A	V	S	S	F	G	K	T	Y	H	M	T	G	W	K	V	G	Y	C	V	A	P	.	.	.	.	.	.	.	A	P	I	S	A	E	I	R	K	V	H	Q	Y	L	T	F	S	V	N	T	P	A	Q	L	A	L	A	D	M	L	R	A	E	.	.	.	.	.
Query Conservation									.	.	.																									.	.	.	.	.	.	.																																		.	.	.	.	.
Alig confidence									.	.	.																									.	.	.	.	.	.	.																																		.	.	.	.	.
Template Conservation
Template Sequence	N	K	F	S	H	L	P	K	E	I	L	T	C	V	C	Y	S	L	S	K	G	F	T	X	Y	G	Q	R	V	G	A	X	I	G	I	S	D	D	E	E	I	A	D	E	F	F	E	V	N	K	S	T	S	R	A	T	W	S	N	I	C	R	P	A	X	R	T	X	A	N	I	V	A	D	P	A	K	F	K	E
Template Known Secondary structure	G	G	G	T	T			T	T									S	T	T	T	T	T			S	S										S	S																			T	S	S														T
Template Predicted Secondary structure
Template SS confidence
	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure	.
Query SS confidence	.
Query Sequence	.	P	E	H	Y	L	A	L	P	D	F	Y	R	Q	K	R	D	I	L	V	N	A	L	N	E	S	R	L	E	I	L	P	C	E	G	T	Y	F	L	L	V	D	Y	S	A	V	S	T	L	D	D	V	E	F	C	Q	W	L	T	Q	E	H	G	V	A	A	I	P	L	S	V	F	C	A	D	P	F	P	H	K
Query Conservation	.
Alig confidence	.																																												.	.	.	.	.										.											.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.										.											.	.	.	.	.	.	.	.	.
Template Sequence	Y	E	A	E	R	N	C	Y	Y	Q	L	I	R	D	R	A	D	I	F	K	Q	E	A	A	Q	V	G	L	P	X	L	P	Y	R	G	G	F	F	I	T	I	P	T	D	.	.	.	.	.	S	A	N	A	I	C	E	E	L	.	K	K	E	H	I	Y	V	I	A	L	.	.	.	.	.	.	.	.	.	A	N
Template Known Secondary structure																											T								S	S	S							T	.	.	.	.	.	T									.			T	T							.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																																													.	.	.	.	.										.											.	.	.	.	.	.	.	.	.
Template SS confidence
	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.						.	.	.	.	.	.	370	.	.		.	.	.	.	.	.	.	380	.	.										.	.

	364	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence	L	I	R	L	C	F	A	K	.	K	E	S	T	L	L	A	A	A	E	R	L	R	Q	L
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence	G	I	R	I	A	A	C	G	I	P	K	C	Q	X	T	G	L	A	E	K	I	Y	N	A
Template Known Secondary structure						G	G	G	S						T	T
Template Predicted Secondary structure
Template SS confidence
	385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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