Phyre 2 alignment of P77806 with c3nysA

Job Description P77806
Confidence 99.96% Date Thu Jan 5 12:33:00 GMT 2012

Rank 126 Aligned Residues 329

% Identity 19% Template c3nysA_

PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase wbpe; PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution

Resolution 1.45 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	A	I	N	L	S	Q	G	F	P	D	F	D	G	P	R	Y	L	Q	E	R	L	A	H	H	V	A	Q	G	A	N	Q	Y	A	P	M	T	G	V	Q	A	L	R	E	A	I	A	Q	K	T	E	R	L	Y	G	Y	Q	P	D	A	D	S	D	I	T	V	T	A	G	A	T	E	A	L	Y	A	A	I	T	A
Query Conservation
Alig confidence														.	.																.	.																						.	.	.	.	.	.	.	.	.
Template Conservation														.	.																.	.																						.	.	.	.	.	.	.	.	.
Template Sequence	E	F	I	D	L	K	N	Q	Q	A	R	I	K	.	.	D	K	I	D	A	G	I	Q	R	V	L	R	H	G	Q	.	.	Y	I	L	G	P	E	V	T	E	L	E	D	R	L	A	D	F	V	G	A	K	.	.	.	.	.	.	.	.	.	Y	C	I	S	C	A	N	G	T	D	A	L	Q	I	V	Q	M	A
Template Known Secondary structure		S	S		S							T		.	.																.	.		S	S																T		S	.	.	.	.	.	.	.	.	.						S
Template Predicted Secondary structure														.	.																.	.																						.	.	.	.	.	.	.	.	.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.			.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.										.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.

	111		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence	L	.	V	R	N	G	D	E	V	I	C	F	D	P	S	Y	D	S	Y	A	P	A	I	A	L	S	G	G	I	V	K	R	M	A	L	Q	P	P	H	F	R	V	D	W	Q	E	F	A	A	L	L	S	E	R	T	R	L	V	I	L	N	T	P	H	N	P	S	A	T	V	W	Q	Q	A	D	F	A	A	L	W
Query Conservation		.
Alig confidence		.																																																									.	.	.												.	.	.
Template Conservation																																																											.	.	.												.	.	.
Template Sequence	L	G	V	G	P	G	D	E	V	I	T	P	G	F	T	Y	V	A	T	A	E	T	V	A	L	L	G	A	K	P	V	Y	V	D	I	D	P	R	T	Y	N	L	D	P	Q	L	L	E	A	A	I	T	P	R	T	K	A	I	.	.	.	I	P	V	S	L	Y	G	Q	C	A	D	.	.	.	F	D	A	I	N
Template Known Secondary structure	T	T			T	T							S	S	S		T									T	T								B		T	T	T		S	B		G	G	G	T	G	G	G			T	T					.	.	.			B		G	G	G					.	.	.
Template Predicted Secondary structure																																																											.	.	.												.	.	.
Template SS confidence
	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.				.	140	.	.	.

	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.
Query SS confidence																																																																													.	.	.	.
Query Sequence	Q	A	I	A	G	H	E	I	F	V	I	S	D	E	V	Y	E	H	I	N	F	S	Q	Q	G	H	A	S	V	L	A	H	P	Q	L	R	E	R	A	V	A	V	S	S	F	G	K	T	Y	H	M	T	G	W	K	V	G	Y	C	V	A	P	A	P	I	S	A	E	I	R	K	V	H	Q	Y	L	.	.	.	.
Query Conservation																																																																													.	.	.	.
Alig confidence																									.	.	.	.	.																																																.	.	.	.
Template Conservation																									.	.	.	.	.
Template Sequence	A	I	A	S	K	Y	G	I	P	V	I	E	D	A	A	Q	S	F	G	A	S	Y	K	G	.	.	.	.	.	K	R	S	C	N	L	S	T	V	A	C	T	S	F	F	P	S	A	P	L	G	C	Y	G	D	G	G	A	I	F	T	N	D	D	E	L	A	T	A	I	R	Q	I	A	R	H	G	Q	D	R	R
Template Known Secondary structure						T	T			B					T	T	T	T	T				T	T	.	.	.	.	.			T	T	S	S	S	S								T	T	S	S	S			S	S								S												T	B	T	T				T
Template Predicted Secondary structure																									.	.	.	.	.
Template SS confidence
	144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.						.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.

					266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure	.	.	.	.
Query SS confidence	.	.	.	.
Query Sequence	.	.	.	.	T	F	S	V	N	T	P	A	Q	L	A	L	A	D	M	L	R	A	E	P	E	H	Y	L	A	L	P	D	F	Y	R	Q	K	R	D	I	L	V	N	A	L	N	E	S	R	L	E	I	L	P	C	E	G	T	Y	F	L	L	V	D	Y	S	A	V	S	T	L	D	D	V	E	F	C	Q	W	L
Query Conservation	.	.	.	.
Alig confidence	.	.	.	.
Template Conservation
Template Sequence	Y	H	H	I	R	V	G	V	N	S	R	L	D	T	L	Q	A	A	I	L	L	P	K	L	E	I	F	E	E	E	I	A	L	R	Q	K	V	A	A	E	Y	D	L	S	L	K	Q	V	G	I	G	T	P	F	I	E	V	N	N	I	S	V	Y	A	Q	Y	T	V	R	M	D	N	R	E	S	V	Q	A	S	L
Template Known Secondary structure	T				S				B																	T																						T	T								T	T						S	S						T	T
Template Predicted Secondary structure
Template SS confidence
	219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

	342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.																	.	.	.	.	.	.	.	.	370	.			.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Query Sequence	T	Q	E	H	G	V	A	A	I	P	L	S	V	F	C	A	D	P	F	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	K	L	I	R	L	C	F	A	K	.	.	K	E	S	T	L	L	A	A	A	E	R	L	R
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Alig confidence	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation	.
Template Sequence	.	K	A	A	G	V	P	T	A	V	H	Y	P	I	P	L	N	K	Q	P	A	V	A	D	E	K	A	K	L	P	V	G	D	K	A	A	T	Q	V	M	S	L	P	M	H	P	Y	L	D	T	A	S	I	K	I	I	C	A	A	L	T
Template Known Secondary structure	.				T				B		S		S	S		G	G	G	S	G	G	G			S	S	S																			T	T
Template Predicted Secondary structure	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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