Phyre 2 alignment of P77806 with c3l44A

Job Description P77806
Confidence 99.91% Date Thu Jan 5 12:33:00 GMT 2012

Rank 171 Aligned Residues 334

% Identity 13% Template c3l44A_

PDB info PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase 1; PDBTitle: crystal structure of bacillus anthracis heml-1, glutamate semialdehyde2 aminotransferase

Resolution 2.05 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	28	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure												.	.						.
Query SS confidence												.	.						.
Query Sequence	Q	Q	H	Q	A	I	N	L	S	Q	G	.	.	F	P	D	F	D	.	G	P	R	Y	L	Q	E	R	L	A	H	H	V	A	Q	G	A	N	Q	Y	A	P	M	T	G	V	Q	A	L	R	E	A	I	A	Q	K	T	E	R	L	Y	G	Y	Q	P	D	A	D	S	D	I	T	V	T	A	G	A	T	E	A	L
Query Conservation												.	.						.
Alig confidence												.	.						.																																									.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.
Template Sequence	D	G	N	K	Y	I	D	Y	L	A	A	Y	G	P	I	I	T	G	H	A	H	P	H	I	T	K	A	I	T	T	A	A	E	N	G	V	L	Y	G	T	P	T	A	L	E	V	K	F	A	K	X	L	K	E	A	X	P	A	L	.	.	.	.	.	.	.	.	D	K	V	R	F	V	N	S	G	T	E	A	V
Template Known Secondary structure	T									G	G	G	T	T		S	S		B	T																S			S	S																	T	T		.	.	.	.	.	.	.	.	S						S	S
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.
Template SS confidence
	53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.									.	.	.	.	.	.	.	.	120	.	.	.	.

	105	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140												.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure							.	.																															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.																															.	.	.	.	.	.	.	.	.	.	.
Query Sequence	Y	A	A	I	T	A	.	.	L	V	R	N	G	D	E	V	I	C	F	D	P	S	Y	D	S	Y	A	P	A	I	A	L	S	G	G	I	V	K	.	.	.	.	.	.	.	.	.	.	.	R	M	A	L	Q	P	P	H	F	R	V	D	W	Q	E	F	A	A	L	L	S	E	R	T	R	L	V	I	L	N	T
Query Conservation							.	.																															.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.																															.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	X	T	T	I	R	V	A	R	A	Y	T	G	R	T	K	I	X	K	F	A	G	C	Y	H	G	H	S	D	L	V	L	V	A	L	G	T	P	D	S	A	G	V	P	Q	S	I	A	Q	E	V	I	T	V	P	F	N	N	V	E	T	L	K	E	A	L	D	K	W	G	H	E	V	A	A	I	L	V	E	P	I
Template Known Secondary structure																				T	T					S	S	G	G	G	G	B					B	S	S	T	T							T	T						T	T													G	G	G								S	S
Template Predicted Secondary structure
Template SS confidence
	125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

	172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	H	N	P	S	A	T	V	W	Q	Q	A	D	F	A	A	L	W	Q	A	I	A	G	H	E	I	F	V	I	S	D	E	V	Y	E	H	I	N	F	S	Q	Q	G	H	A	S	V	L	A	H	P	Q	L	R	E	R	A	V	A	V	S	S	F	G	K	T	Y	H	M	T	G	W	K	V	G	Y	C	V	A	P
Query Conservation
Alig confidence																																											.	.	.																					.	.	.	.	.
Template Conservation																																											.	.	.																					.	.	.	.	.
Template Sequence	V	G	N	F	G	I	V	E	P	K	P	G	F	L	E	K	V	N	E	L	V	H	E	A	G	A	L	V	I	Y	D	E	V	I	T	A	F	R	F	X	Y	G	.	.	.	G	A	Q	D	L	L	G	V	T	P	D	L	T	A	L	G	V	I	G	G	.	.	.	.	.	G	L	P	I	G	A	Y	G	G	K
Template Known Secondary structure	B		T	T	S		B				T	T											T	T	T								T	T	T	T	T	T	S	S	S	S	.	.	.							T				S							T	T	T	.	.	.	.	.	T	S	S
Template Predicted Secondary structure																																											.	.	.																					.	.	.	.	.
Template SS confidence
	212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.				.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.						.	.	.	.	.	.	280	.	.	.

	252	.	.	.	.	.	.	.	260	.	.	.	.	.						.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.
Query SS confidence															.	.	.	.	.
Query Sequence	A	P	I	S	A	E	I	R	K	V	H	Q	Y	L	.	.	.	.	.	T	F	S	V	N	T	P	A	Q	L	A	L	A	D	M	L	R	A	E	P	E	H	Y	L	A	L	P	D	F	Y	R	Q	K	R	D	I	L	V	N	A	L	N	E	S	R	L	E	I	L	P	C	E	G	T	Y	F	L	L	V	D	Y
Query Conservation															.	.	.	.	.
Alig confidence															.	.	.	.	.
Template Conservation
Template Sequence	K	E	I	X	E	Q	V	A	P	L	G	P	A	Y	Q	A	G	T	X	A	G	N	P	A	S	X	A	S	G	I	A	C	L	E	V	L	Q	Q	E	G	L	Y	E	K	L	D	E	L	G	A	T	L	E	K	G	I	L	E	Q	A	A	K	H	N	I	D	I	T	L	N	R	L	K	G	A	L	T	V	Y	F
Template Known Secondary structure					T	T	B	T	T	T	S	S	B					T	T	T	T																T	S	T	T																							T	T									T	T
Template Predicted Secondary structure
Template SS confidence
	285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.

	327	.	.	330	.	.	.	.	.	.											.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.
Query Sequence	S	A	V	S	T	L	D	D	V	E	.	.	.	.	.	.	.	.	.	.	F	C	Q	W	L	T	Q	E	H	G	V	A	A	I	P	L	S	V	F	C	A	D	P	F	P	H	K	L	I	R	L	C	F	A	K	K	E	S	T	L	L	A	A	A	E	R	L	R	Q
Query Conservation											.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.
Template Sequence	T	T	N	T	I	E	D	Y	D	A	A	Q	D	T	D	G	E	X	F	G	K	F	F	K	L	X	L	Q	E	G	V	N	L	A	P	.	.	.	.	.	.	.	.	S	K	Y	E	A	W	F	L	T	T	E	H	T	K	E	D	I	E	Y	T	I	E	A	V	G	R
Template Known Secondary structure	S	S	S				S							S															T	T					S	.	.	.	.	.	.	.	.	S	T	T							T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.
Template SS confidence
	365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.									400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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