Job Description P77806 Confidence 100.00% Date Thu Jan 5 12:33:00 GMT 2012 Rank 55 Aligned Residues 355 % Identity 14% Template c3k7yA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: aspartate aminotransferase of plasmodium falciparum Resolution 2.80 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.				.	.	.	.	.	.	30	.	.	.	.	.	.	.	.						.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																.	.	.																.	.	.	.	.																									.
Query SS confidence																.	.	.																.	.	.	.	.																									.
Query Sequence		S	K	L	P	Q	L	G	T	T	I	F	T	Q	M	.	.	.	S	A	L	A	Q	Q	H	Q	A	I	N	L	S	Q	G	.	.	.	.	.	F	P	D	F	D	G	P	R	Y	L	Q	E	R	L	A	H	H	V	A	Q	G	A	N	Q	.	Y	A	P	M	T	G	V	Q	A	L	R	E	A	I	A	Q	K	T
Query Conservation																.	.	.																.	.	.	.	.																									.
Alig confidence																.	.	.																.	.	.	.	.																									.
Template Conservation
Template Sequence		S	S	L	E	N	I	E	V	D	N	I	L	K	T	A	R	E	F	K	E	D	T	C	E	E	K	I	N	L	S	I	G	V	C	C	N	D	D	G	D	L	H	I	F	D	S	V	L	N	A	D	K	L	V	T	E	N	Y	K	E	K	P	Y	L	L	G	N	G	T	E	D	F	S	T	L	T	Q	N	L	I
Template Known Secondary structure		G	G																	T	T	S	S		S	S					S		S	S		B		T	T	S	S	B																								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																.	.																						.																															.
Query SS confidence																.	.																						.																															.
Query Sequence		E	R	L	Y	G	Y	Q	P	D	A	D	S	D	I	.	.	T	V	T	A	G	A	T	E	A	L	Y	A	A	I	T	A	L	V	R	N	G	.	D	E	V	I	C	F	D	P	S	Y	D	S	Y	A	P	A	I	A	L	S	G	G	I	V	K	R	M	A	L	Q	.	P	P	H	F	R	V	D	W	Q	E	F
Query Conservation																.	.																						.																															.
Alig confidence													.			.	.																						.																															.
Template Conservation													.
Template Sequence		F	G	N	N	S	K	Y	I	E	D	K	.	K	I	C	T	I	Q	C	I	G	G	T	G	A	I	F	V	L	L	E	F	L	K	M	L	N	V	E	T	L	Y	V	T	N	P	P	Y	I	N	H	V	N	M	I	E	S	R	G	F	N	L	K	Y	I	N	F	F	D	Y	N	L	I	D	I	N	Y	D	L	F
Template Known Secondary structure				S	S		T	T	T	T	T	T	.																							T	T	T								S	S											T	T	T											T	T	T	T
Template Predicted Secondary structure													.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		157	.	.	160				.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure						.	.	.																																																					.	.
Query SS confidence						.	.	.																																																					.	.
Query Sequence		A	A	L	L	.	.	.	S	E	R	T	R	L	V	I	L	N	T	P	H	N	P	S	A	T	V	W	Q	Q	A	D	F	A	A	L	W	Q	A	I	A	G	H	E	I	F	V	I	S	D	E	V	Y	E	H	I	N	F	S	Q	.	.	Q	G	H	A	S	V	L	A	H	P	Q	L	R	E	R	A	V	A	V
Query Conservation						.	.	.																																																					.	.
Alig confidence						.	.	.																																																					.	.
Template Conservation
Template Sequence		L	N	D	L	R	N	I	P	N	G	S	S	V	I	L	Q	I	S	C	Y	N	P	C	S	V	N	I	E	E	K	Y	F	D	E	I	I	E	I	V	L	H	K	K	H	V	I	I	F	D	I	A	Y	Q	G	F	G	H	T	N	L	E	E	D	V	L	L	I	R	K	F	E	E	K	N	I	A	F	S	V	C
Template Known Secondary structure								S		S	S								S	S		T	T	T																												S		T	T	T	S	S	S	S	T	T	G	G	G								T	T	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.								.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.							.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.																																	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.																																	.	.	.	.	.	.
Query Sequence		S	S	F	G	K	T	Y	H	M	T	G	W	K	V	G	Y	C	V	A	P	.	.	.	.	.	.	.	A	P	I	S	A	E	I	R	K	V	H	Q	Y	L	T	F	S	V	N	T	P	A	Q	L	A	L	A	D	M	L	R	A	.	.	.	.	.	.	E	P	E	H	Y	L	A	L	P	D	F	Y	R	Q	K
Query Conservation																						.	.	.	.	.	.	.																																	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	S	F	S	K	N	M	S	L	Y	G	E	R	A	G	A	L	H	I	V	C	K	N	Q	E	E	K	K	I	V	F	N	N	L	C	F	I	V	R	K	F	Y	S	S	P	V	I	H	T	N	R	I	L	C	Q	L	L	N	N	Q	N	L	K	L	N	W	I	K	E	L	S	Q	L	S	Q	R	I	T	N	N
Template Known Secondary structure					T	T	T	S			T	T	T	T									S	S																	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310									.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure														.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.
Query Sequence		R	D	I	L	V	N	A	L	N	E	S	R	.	.	.	.	.	.	.	.	L	E	I	L	P	C	E	G	T	Y	F	L	L	V	D	Y	S	A	V	S	T	L	D	D	V	E	F	C	Q	W	L	T	Q	E	H	G	V	A	A	I	P	L	S	V	F	C	A	D	P	F	P	H	K	L	I	R	L	C	F	A
Query Conservation														.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.							.												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.							.												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	L	F	F	N	K	L	E	T	Y	Q	K	K	Y	N	L	N	Y	D	W	N	V	Y	K	K	Q	R	G	L	F	S	F	V	P	L	L	A	.	.	.	.	.	.	.	K	I	A	E	H	L	.	K	T	H	H	I	Y	I	I	N	N	G	.	.	.	.	.	.	.	.	.	.	.	.	R	I	N	V	S
Template Known Secondary structure													G	G	G	G	T					G	G	G	G	S	S			S	S					G	G	G	G	.	.	.	.	.	.	.	G	G	T	T	T	T	.	T	T	T	T					T	T	S	.	.	.	.	.	.	.	.	.	.	.	.				G	G
Template Predicted Secondary structure																																								.	.	.	.	.	.	.							.												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.								.	.	.	.	.	.		.	370	.	.	.	.	.	.	.	.	.													380	.	.	.	.
		371		.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		K	.	K	E	S	T	L	L	A	A	A	E	R	L	R	Q
Query Conservation			.
Alig confidence			.
Template Conservation
Template Sequence		G	I	T	K	N	N	V	D	Y	I	A	D	K	I	C	L
Template Known Secondary structure		G			T	T
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions