Job Description P77806 Confidence 100.00% Date Thu Jan 5 12:33:00 GMT 2012 Rank 34 Aligned Residues 364 % Identity 17% Template c3ihjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp Resolution 2.30 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.													.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		F	T	Q	M	S	A	L	A	Q	Q	H	Q	A	I	N	L	S	Q	G	F	P	D	F	D	G	P	R	Y	L	Q	E	R	L	A	H	H	V	A	Q	G	A	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	P	M	T	G	V	Q	A	L	R	E	A	I	A	Q	K	T	E	R	L	.	Y	G	Y
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		I	E	L	E	L	Q	R	G	I	K	K	P	F	T	E	V	I	R	A	N	P	I	T	F	L	R	Q	V	M	A	L	C	T	Y	P	N	L	L	D	S	P	S	F	P	E	D	A	K	K	R	A	R	R	I	L	Q	A	C	S	Q	G	V	N	C	I	R	E	D	V	A	A	Y	I	T	R	R	D	G	G	V
Template Known Secondary structure								T	T				S	S	S	S		B																		G	G	G	G	G		S	S	S																		S																T	T	T
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																															.	.	.	.																																		.
Query SS confidence																															.	.	.	.																																		.
Query Sequence		Q	P	D	A	D	S	D	I	T	V	T	A	G	A	T	E	A	L	Y	A	A	I	T	A	L	V	R	N	G	.	.	.	.	D	E	V	I	C	F	D	P	S	Y	D	S	Y	A	P	A	I	A	L	S	G	G	I	V	K	R	M	A	L	Q	P	P	H	.	F	R	V	D	W	Q	E	F	A	A	L	L	S
Query Conservation																															.	.	.	.																																		.
Alig confidence							.																								.	.	.	.																																		.
Template Conservation							.
Template Sequence		P	A	D	P	D	.	N	I	Y	L	T	T	G	A	S	D	G	I	S	T	I	L	K	I	L	V	S	G	G	G	K	S	R	T	G	V	M	I	P	I	P	Q	Y	P	L	Y	S	A	V	I	S	E	L	D	A	I	Q	V	N	Y	Y	L	D	E	E	N	C	W	A	L	N	V	N	E	L	R	R	A	V	Q
Template Known Secondary structure					G	G	.	G					S	S																	G	G	G	S								S			T									T	T									B	G	G	G	T	T	B
Template Predicted Secondary structure							.
Template SS confidence
		175	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
							162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.									.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																																							.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																																							.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	E	R	T	R	L	V	I	L	N	T	P	H	N	P	S	A	T	V	W	Q	Q	A	D	F	A	A	L	W	Q	A	I	A	G	H	E	I	F	V	I	S	D	E	V	Y	E	H	I	N	F	S	Q	Q	G	H	.	.	.	.	.	.	.	.	A	S	V	L	A	H	P	Q	L	R	E	R	A
Query Conservation		.	.	.	.	.																																																							.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	K	D	H	C	D	P	K	V	L	C	I	I	N	P	G	N	P	T	G	Q	V	Q	S	R	K	C	I	E	D	V	I	H	F	A	W	E	E	K	L	F	L	L	A	D	E	V	Y	Q	D	N	V	Y	S	P	D	C	R	F	H	S	F	K	K	V	L	Y	E	M	G	P	E	Y	S	S	N	V	E	L
Template Known Secondary structure				T	T	T	S									S	S		T	T	T																				T								T	T	T	T		B			T	T													T						T	T
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		229	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.											.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure												.																										.	.																				.	.	.	.	.	.	.	.	.	.
Query SS confidence												.																										.	.																				.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	V	S	S	F	G	K	T	Y	.	H	M	T	G	W	K	V	G	Y	C	V	A	P	A	P	I	S	A	E	I	R	K	V	H	Q	.	.	Y	L	T	F	S	V	N	T	P	A	Q	L	A	L	A	D	M	L	R	.	.	.	.	.	.	.	.	.	.	A	E	P	E	H	Y	L	A	L	P	D	F	Y
Query Conservation												.																										.	.																				.	.	.	.	.	.	.	.	.	.
Alig confidence												.																										.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	F	H	S	T	S	K	G	Y	M	G	E	C	G	Y	R	G	G	Y	M	E	V	I	N	L	H	P	E	I	K	G	Q	L	V	K	L	L	S	V	R	L	C	P	P	V	S	G	Q	A	A	M	D	I	V	V	N	P	P	V	A	G	E	E	S	F	E	Q	F	S	R	E	K	E	S	V	L	G	N	L
Template Known Secondary structure							S	S	S	S	T	T			S	S	S									S																S															T					T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.											.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																.																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																.																			.	.	.	.	.	.	.	.	.	.
Query Sequence		R	Q	K	R	D	I	L	V	N	A	L	N	E	S	.	R	L	E	I	L	P	C	E	G	T	Y	F	L	L	V	D	Y	S	.	.	.	.	.	.	.	.	.	.	A	V	S	T	L	D	D	V	E	F	C	Q	W	L	T	Q	E	H	G	V	A	A	I	P	L	S	V	F	C	A	D	P	F	P	H	K	L
Query Conservation																.																			.	.	.	.	.	.	.	.	.	.
Alig confidence																.																			.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation																																																																													.
Template Sequence		A	K	K	A	K	L	T	E	D	L	F	N	Q	V	P	G	I	H	C	N	P	L	Q	G	A	M	Y	A	F	P	R	I	F	I	P	A	K	A	V	E	A	A	Q	A	H	Q	M	A	P	D	M	F	Y	C	M	K	L	L	E	E	T	G	I	C	V	V	P	G	S	G	F	G	Q	R	E	.	G	T	Y	H
Template Known Secondary structure														T	S	T	T								B	S	S																			T	T	S																B					G	G	G	T				T	.	T			B
Template Predicted Secondary structure																																																																													.
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.		.	490	.	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	L	C	F	A	K	K	E	S	T	L	L	A	A	A	E	R	L	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	M	T	I	L	P	P	V	E	K	L	K	T	V	L	Q	K	V	K	D
Template Known Secondary structure								S
Template Predicted Secondary structure
Template SS confidence
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions