Job Description P77806 Confidence 100.00% Date Thu Jan 5 12:33:00 GMT 2012 Rank 27 Aligned Residues 369 % Identity 18% Template c3if2B_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution Resolution 2.50 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.						.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.													.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.																					.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.																					.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	S	K	L	P	Q	L	G	T	T	I	F	T	Q	M	S	A	.	.	.	.	.	L	A	Q	Q	H	Q	A	I	N	L	S	Q	G	F	P	D	F	D	G	P	.	.	R	Y	L	Q	E	R	L	A	H	H	V	A	Q	G	A	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	P	M	T	G	V
Query Conservation																			.	.	.	.	.																					.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.										.	.	.	.	.																					.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.
Template Sequence		G	Q	K	F	T	Q	.	.	P	T	G	I	S	Q	L	X	D	D	L	G	D	A	L	K	S	D	Q	P	V	N	X	L	G	G	G	N	P	A	K	I	D	A	V	N	E	L	F	L	E	T	Y	K	A	L	G	N	D	N	D	T	G	K	A	N	S	S	A	I	I	S	X	A	N	Y	S	N	P	Q	G	D
Template Known Secondary structure							S	.	.																T	S	S	S						S																									S		T	T		S										S				T	T
Template Predicted Secondary structure								.	.
Template SS confidence
		7	.	.	10	.	.			.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.									.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.							.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Query Sequence		Q	A	L	R	E	A	I	A	Q	K	T	E	R	L	Y	G	Y	Q	P	D	A	D	S	D	I	T	V	T	A	G	A	T	E	A	L	Y	A	A	I	T	A	L	V	R	N	.	.	.	.	.	.	.	.	G	D	E	V	I	C	F	D	P	S	Y	D	S	Y	A	P	A	.	.	.	.	.	.	I	A	L	S
Query Conservation																																															.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Alig confidence																								.																							.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template Conservation																								.
Template Sequence		S	A	F	I	D	A	L	V	G	F	F	N	R	H	Y	D	W	N	L	T	S	E	.	N	I	A	L	T	N	G	S	Q	N	A	F	F	Y	L	F	N	L	F	G	G	A	F	V	N	E	K	S	V	D	K	S	I	L	L	P	L	T	P	E	Y	I	G	Y	S	D	V	H	V	E	G	Q	H	F	A	A	V
Template Known Secondary structure																						G	G	.	G					S	S													S																S	S	S	S			G	G	G	T	T			S	S	S
Template Predicted Secondary structure																								.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.					.	150	.	.	.	.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.														.	.	.
Query SS confidence															.	.	.	.														.	.	.
Query Sequence		G	G	I	V	K	R	M	A	L	Q	P	P	H	.	.	.	.	F	R	V	D	W	Q	E	F	A	A	L	L	S	.	.	.	E	R	T	R	L	V	I	L	N	T	P	H	N	P	S	A	T	V	W	Q	Q	A	D	F	A	A	L	W	Q	A	I	A	G	H	E	I	F	V	I	S	D	E	V	Y	E	H	I
Query Conservation															.	.	.	.														.	.	.
Alig confidence															.	.	.	.														.	.	.
Template Conservation
Template Sequence		L	P	H	I	D	E	V	T	H	D	G	E	E	G	F	F	K	Y	R	V	D	F	E	A	L	E	N	L	P	A	L	K	E	G	R	I	G	A	I	C	C	S	R	P	T	N	P	T	G	N	V	L	T	D	E	E	X	A	H	L	A	E	I	A	K	R	Y	D	I	P	L	I	I	D	N	A	Y	G	X	P
Template Known Secondary structure											T	T																T						T	T									S	S		T	T	T																			T	T								T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.				.
Predicted Secondary structure																																																																														.	.	.
Query SS confidence																																																																														.	.	.
Query Sequence		N	F	S	Q	Q	G	H	A	S	V	L	A	H	P	Q	L	R	E	R	A	V	A	V	S	S	F	G	K	T	Y	H	M	T	G	W	K	V	G	Y	C	V	A	P	A	P	I	S	A	E	I	R	K	V	H	Q	Y	L	T	F	S	V	N	T	P	A	Q	L	A	L	A	D	M	L	R	A	E	.	.	.	P
Query Conservation																																																																														.	.	.
Alig confidence							.	.	.																					.																																																.	.	.
Template Conservation							.	.	.																					.
Template Sequence		F	P	N	I	I	.	.	.	Y	S	D	A	H	L	N	W	D	N	N	T	I	L	C	F	S	L	S	K	.	I	G	L	P	G	X	R	T	G	I	I	V	A	D	A	K	V	I	E	A	V	S	A	X	N	A	V	V	N	L	A	P	T	R	F	G	A	A	I	A	T	P	L	V	A	N	D	R	I	K	Q
Template Known Secondary structure		T	T			B	.	.	.		S								T	T							S	G	G	.	G	T		G	G	G																							T	S	S															T	S
Template Predicted Secondary structure							.	.	.																					.
Template SS confidence
		251	.	.	.	.				.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.					310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence		E	H	Y	L	A	L	P	D	F	Y	R	Q	K	R	D	I	L	V	N	A	L	N	E	S	.	.	.	.	R	L	E	I	L	P	C	E	G	T	Y	F	L	L	V	D	Y	S	A	V	S	T	L	D	D	V	E	F	C	Q	W	L	T	Q	E	H	G	V	A	A	I	P	L	S	V	F	C	A	D	P	F	P
Query Conservation																										.	.	.	.
Alig confidence																										.	.	.	.																				.	.
Template Conservation																																																	.	.
Template Sequence		L	S	D	N	E	I	K	P	F	Y	Q	K	Q	A	T	L	A	V	K	L	L	K	Q	A	L	G	D	Y	P	L	X	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	.	.	L	P	I	S	T	L	D	L	Y	E	R	L	K	A	K	G	T	L	I	V	P	S	E	Y	F	F	P	G	V	D	V
Template Known Secondary structure						T																				S	S	S	S	S								B	S	S							T	T	.	.		S	S												T	T						G	G	G	S		T	T	S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.			.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		362	.	.							.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.
Query Sequence		H	K	L	.	.	.	.	.	.	I	R	L	C	F	A	K	K	E	S	T	L	L	A	A	A	E	R	L	R	Q	L
Query Conservation					.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.
Template Conservation
Template Sequence		S	D	Y	Q	H	A	H	E	C	I	R	X	S	I	A	A	D	E	Q	T	L	I	D	G	I	K	V	I	G	E	V
Template Known Secondary structure		T	T		G	G	G	G	S						S		S
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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