Job Description P77806 Confidence 100.00% Date Thu Jan 5 12:33:00 GMT 2012 Rank 83 Aligned Residues 351 % Identity 13% Template c3hqtB_ PDB info PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa Resolution 2.70 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.																			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																											.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																											.	.	.
Query Sequence		P	Q	L	G	T	T	I	F	T	Q	M	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	Q	Q	H	Q	A	I	N	L	S	Q	G	F	P	.	D	F	D	G	P	R	Y	L	Q	E	R	L	A	H	H	V	A	Q	G	A	N	Q	Y	A	P	M	.	.	.	T	G	V	Q
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																											.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																											.	.	.
Template Conservation
Template Sequence		P	Q	L	P	D	F	I	Q	N	K	I	D	H	Y	I	E	N	Y	F	D	I	N	K	N	G	K	H	L	V	L	G	K	Q	A	S	P	D	D	I	I	L	Q	S	N	D	Y	L	A	L	A	N	H	P	L	I	K	A	R	L	A	K	S	L	L	E	E	Q	Q	S	L	F	M	S	A	S	F	L	Q	N	D
Template Known Secondary structure																				T	T	T	S	T	T	S	S		T	T			S				T	T	S								T	T			T	T														S							S	B	G	G	G	G		S	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	R	E	A	I	A	Q	K	T	E	R	L	Y	G	Y	Q	P	D	A	D	S	D	I	T	V	T	A	G	A	T	E	A	L	Y	A	A	I	T	A	L	V	R	N	G	D	E	V	I	C	F	D	P	S	Y	D	S	Y	A	P	A	I	A	L	S	G	G	I	V	K	R	M	A	L	Q	P	P	H	F	R
Query Conservation
Alig confidence																			.	.	.	.	.																																																						.	.	.	.	.
Template Conservation																			.	.	.	.	.																																																						.	.	.	.	.
Template Sequence		Y	D	K	P	M	I	E	K	R	L	A	K	F	T	G	F	D	.	.	.	.	.	E	C	L	L	S	Q	S	G	W	N	A	N	V	G	L	L	Q	T	I	C	Q	P	N	T	N	V	Y	I	D	F	F	A	H	M	S	L	W	E	G	A	R	Y	A	N	A	Q	A	H	P	F	M	H	N	.	.	.	.	.
Template Known Secondary structure		T	T	S												T		S	.	.	.	.	.						S																T	T							T	T	S											T	T								T	T	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.																																																						.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100						.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		V	D	W	Q	E	F	A	A	L	L	S	E	R	T	.	R	L	V	I	L	N	T	P	H	N	P	S	A	T	V	W	Q	Q	A	D	F	A	A	L	W	Q	A	I	A	G	H	E	I	F	V	I	S	D	E	V	Y	E	H	I	N	F	S	Q	Q	G	H	A	S	V	L	A	H	P	Q	L	R	E	R	A	V
Query Conservation																.
Alig confidence		.														.																				.	.	.
Template Conservation		.																																		.	.	.
Template Sequence		.	N	C	D	H	L	R	M	L	I	Q	R	H	G	P	G	I	I	V	V	D	S	I	Y	S	T	L	G	T	I	A	P	L	A	.	.	.	E	L	V	N	I	S	K	E	F	G	C	A	L	L	V	D	E	S	H	S	L	G	T	H	G	P	N	G	A	G	L	L	A	E	L	G	L	T	R	E	V	H	F
Template Known Secondary structure		.														S							S	B		T	T	T			B					.	.	.									T	T								T	T	T	B	T	T	B	S	G	G	G							T	T		G	G	G		S
Template Predicted Secondary structure		.																																		.	.	.
Template SS confidence
			154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.				.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	S	S	F	G	K	T	Y	H	M	T	G	W	K	V	G	Y	C	V	A	P	A	P	I	S	A	E	I	R	K	V	H	Q	Y	L	T	F	S	V	N	T	P	A	Q	L	A	L	A	D	M	L	R	A	E	P	E	H	Y	L	A	L	P	D	F	Y	R	Q	K	R	D	I	L	V	N	A	L	N	E	S
Query Conservation
Alig confidence															.	.
Template Conservation															.	.
Template Sequence		M	T	A	S	L	A	K	T	F	A	Y	R	A	.	.	G	A	I	W	C	N	N	E	V	N	R	C	V	P	F	I	S	Y	P	A	I	F	S	S	T	L	L	P	Y	E	A	A	G	L	E	T	T	L	E	I	I	E	S	A	D	N	R	R	Q	H	L	D	R	M	A	R	K	L	R	I	G	L	S	Q	L
Template Known Secondary structure						S	S	S	T	T		S	S		.	.						S	S	S	G	G	G	T											S	B																				T																					T
Template Predicted Secondary structure															.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370			.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		R	L	E	I	L	P	C	E	G	T	Y	F	L	L	V	D	Y	S	A	V	S	T	L	D	D	V	E	F	C	Q	W	L	T	Q	E	H	G	V	A	A	I	P	L	S	V	F	C	A	D	P	F	P	H	K	L	I	R	L	C	F	A	.	.	K	K	E	S	T	L	L	A	A	A	E	R	L	R	Q
Query Conservation																																																															.	.
Alig confidence						.	.														.	.												.																	.												.	.
Template Conservation						.	.														.	.												.																	.
Template Sequence		G	L	T	I	.	.	R	S	E	S	Q	I	I	G	L	E	T	G	D	.	.	E	R	N	T	E	K	V	R	D	Y	L	.	E	S	N	G	V	F	G	S	V	F	C	R	P	A	T	S	.	K	N	K	N	I	I	R	L	S	L	N	S	D	V	N	D	E	Q	I	A	K	I	I	E	V	C	S	D
Template Known Secondary structure		T				.	.				S	S								S	.	.												.			T	T								T	T	S	S		.	T	T										T	T
Template Predicted Secondary structure						.	.														.	.												.																	.
Template SS confidence
		308	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.			.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions