Job Description P77806 Confidence 100.00% Date Thu Jan 5 12:33:00 GMT 2012 Rank 28 Aligned Residues 367 % Identity 17% Template c3eibB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana Resolution 1.85 Å

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		10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.								.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.						.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure										.												.	.	.	.	.	.	.																														.	.	.	.	.
Query SS confidence										.												.	.	.	.	.	.	.																														.	.	.	.	.
Query Sequence		S	K	L	P	Q	L	G	T	.	T	I	F	T	Q	M	S	A	L	A	Q	.	.	.	.	.	.	.	Q	H	Q	A	I	N	L	S	Q	G	F	P	D	F	D	G	P	R	Y	L	Q	E	R	L	A	H	H	V	A	.	.	.	.	.	Q	G	A	N	Q	Y	A	P	M	T	G	V	Q	A	L	R	E	A	I
Query Conservation										.												.	.	.	.	.	.	.																														.	.	.	.	.
Alig confidence										.												.	.	.	.	.	.	.																														.	.	.	.	.
Template Conservation
Template Sequence		S	N	M	S	K	L	Q	A	G	Y	L	F	P	E	I	A	R	R	R	S	A	H	L	L	K	Y	P	D	A	Q	V	I	S	L	G	I	G	D	T	T	E	P	I	P	E	V	I	T	S	A	M	A	K	K	A	H	E	L	S	T	I	E	G	Y	S	G	Y	G	A	E	Q	G	A	K	P	L	R	A	A	I
Template Known Secondary structure									S	S																	S	T	T							S	S					S																	T	T	S	T	T	T				S			T	T
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		A	Q	K	T	E	R	L	Y	G	Y	Q	P	D	A	D	S	D	I	T	V	T	A	G	A	T	E	A	L	Y	A	A	I	T	A	L	V	R	N	G	D	E	V	I	C	F	D	P	S	Y	D	S	Y	A	P	A	I	A	L	S	G	G	I	V	K	R	M	A	L	Q	P	P	H	F	R	V	D	W	Q	.	.
Query Conservation																																																																																.	.
Alig confidence													.	.	.																			.																																														.	.
Template Conservation													.	.	.																			.
Template Sequence		A	K	T	F	Y	G	G	L	G	I	G	.	.	.	D	D	D	V	F	V	S	D	G	A	K	C	D	I	S	R	L	Q	.	V	M	F	G	S	N	V	T	I	A	V	Q	D	P	S	Y	P	A	Y	V	D	S	S	V	I	M	G	Q	T	G	Q	F	N	T	D	V	Q	K	Y	G	N	I	E	Y	M	R	C
Template Known Secondary structure							T	T	T	T			.	.	.	G	G	G					S											.					T	T								S			T									T	T		S					T	T	T	T			T	T
Template Predicted Secondary structure													.	.	.																			.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
								155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	E	F	A	A	L	L	S	E	R	T	R	L	V	I	L	N	T	P	H	N	P	S	A	T	V	W	Q	Q	A	D	F	A	A	L	W	Q	A	I	A	G	H	E	I	F	V	I	S	D	E	V	Y	E	H	I	N	F	S	Q	Q	G	H	A	S	V	L	A	H	P	Q	L	R	E	R	A
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																																																							.
Template Conservation																																																																														.
Template Sequence		T	P	E	N	G	F	F	P	D	L	S	T	V	G	R	T	D	I	I	F	F	C	S	P	N	N	P	T	G	A	A	A	T	R	E	Q	L	T	Q	L	V	E	F	A	K	K	N	G	S	I	I	V	Y	D	S	A	Y	A	M	Y	M	S	D	D	N	P	R	S	I	F	E	I	P	G	A	E	.	E	V	A
Template Known Secondary structure			T	T	T	T	T				G	G	G					S						S	S		T	T	T																				T								T	T	G	G	G			S	S			S	S	G	G	G	S	T	T	G	G	.	G	T
Template Predicted Secondary structure																																																																														.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.									.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.																											.
Query SS confidence																															.	.	.	.	.	.	.	.																											.
Query Sequence		V	A	V	S	S	F	G	K	T	Y	H	M	T	G	W	K	V	G	Y	C	V	A	P	A	P	I	S	A	E	.	.	.	.	.	.	.	.	I	R	K	V	H	Q	Y	L	T	F	S	V	N	T	P	A	Q	L	A	L	A	D	M	L	R	A	.	E	P	E	H	Y	L	A	L	P	D	F	Y	R	Q	K	R
Query Conservation																															.	.	.	.	.	.	.	.																											.
Alig confidence																															.	.	.	.	.	.	.	.																											.
Template Conservation
Template Sequence		M	E	T	A	S	F	S	N	Y	A	G	F	T	G	V	R	L	G	W	T	V	I	P	K	K	L	L	Y	S	D	G	F	P	V	A	K	D	F	N	R	I	I	C	T	C	F	N	G	A	S	N	I	S	Q	A	G	A	L	A	C	L	T	P	E	G	L	E	A	M	H	K	V	I	G	F	Y	K	E	N	T
Template Known Secondary structure							S					S	T	T	T	T									T	T		B		T	T	S		B																S												S	S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	L	V	N	A	L	N	E	S	R	L	E	I	L	P	C	E	G	T	Y	F	L	L	V	D	Y	S	A	V	S	T	L	D	D	V	E	F	C	Q	W	L	T	Q	E	H	G	V	A	A	I	P	L	S	V	F	C	A	D	P	F	P	H	K	L	I	R	L	C	F	A	K	K	E	S	T	L	L	A	A
Query Conservation
Alig confidence																															.	.	.																													.	.
Template Conservation																															.	.	.																													.	.
Template Sequence		N	I	I	I	D	T	F	T	S	L	G	Y	D	V	Y	G	G	K	N	A	P	Y	V	W	V	H	F	P	N	.	.	.	Q	S	S	W	D	V	F	A	E	I	L	E	K	T	H	V	V	T	T	P	G	S	G	F	G	P	G	G	.	.	E	G	F	V	R	V	S	A	F	G	H	R	E	N	I	L	E	A
Template Known Secondary structure											T	T							S	S	S	S							T	T	.	.	.	S																				G	G	G	G		G	G	G	.	.	T	T								S
Template Predicted Secondary structure																															.	.	.																													.	.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.				.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.			400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	R	L	R	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	R	R	F	K	Q	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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