Job Description P77806 Confidence 100.00% Date Thu Jan 5 12:33:00 GMT 2012 Rank 52 Aligned Residues 362 % Identity 17% Template c3d6kB_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative aminotransferase; PDBTitle: the crystal structure of a putative aminotransferase from2 corynebacterium diphtheriae Resolution 2.00 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																.	.	.																				.	.	.	.
Query SS confidence																																.	.	.																				.	.	.	.
Query Sequence		L	P	Q	L	G	T	T	I	F	T	Q	M	S	A	L	A	Q	Q	H	Q	A	I	N	L	S	Q	G	F	P	D	.	.	.	F	D	G	P	R	Y	L	Q	E	R	L	A	H	H	V	A	Q	G	A	.	.	.	.	N	Q	Y	A	P	M	T	G	V	Q	A	L	R	E	A	I	A	Q	K	T	E	R	L	Y
Query Conservation																																.	.	.																				.	.	.	.
Alig confidence																																.	.	.																				.	.	.	.																					.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		L	A	Q	V	R	E	E	V	T	A	K	Y	A	E	L	K	A	K	N	L	S	L	D	L	T	R	G	K	P	S	A	E	Q	L	D	L	S	N	D	L	L	S	L	P	G	G	D	F	R	T	K	D	G	V	D	C	R	N	Y	G	G	L	L	G	I	A	D	I	R	E	L	W	A	E	A	L	.	.	.	.
Template Known Secondary structure				T	T														T						S				S								T	T	G	G	G	G	G		S	T	T			B		T	T			B	T	T	S	S			S	S														.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110															.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	Y	Q	P	D	A	D	S	D	I	T	V	T	A	G	A	T	E	A	L	Y	A	A	I	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	R	N	G	D	E	V	I	C	F	D	P	S	Y	D	S	Y	A	P	A	I	A	L	S	G	G	I	V	K	R	M	A	L	Q	P	P	H	F	R
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.						.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.						.
Template Sequence		.	.	G	L	P	A	D	.	L	V	V	A	Q	D	G	S	S	L	N	I	X	F	D	L	I	S	W	S	Y	T	W	G	N	N	D	S	S	R	P	W	S	A	E	E	K	V	K	W	L	C	P	V	P	G	Y	D	R	H	F	T	I	T	E	H	F	G	F	E	X	I	N	V	P	X	T	D	E	G	P	D
Template Known Secondary structure		.	.	T			G	G	.	G					S	S																			T	T		S	S		G	G	G	S	S									S												T	T										T	T
Template Predicted Secondary structure		.	.						.
Template SS confidence
				87	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.						.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																															.																					.	.	.	.	.
Query SS confidence																																															.																					.	.	.	.	.
Query Sequence		V	D	W	Q	E	F	A	A	L	L	S	E	R	T	R	L	V	I	L	N	T	P	H	N	P	S	A	T	V	W	Q	Q	A	D	F	A	A	L	W	Q	A	I	A	G	H	.	E	I	F	V	I	S	D	E	V	Y	E	H	I	N	F	S	Q	Q	G	H	.	.	.	.	.	A	S	V	L	A	H	P	Q	L
Query Conservation																																															.																					.	.	.	.	.
Alig confidence																																															.																					.	.	.	.	.
Template Conservation
Template Sequence		X	G	V	V	R	E	L	V	K	D	P	Q	V	K	G	X	W	T	V	P	V	F	G	N	P	T	G	V	T	F	S	E	Q	T	C	R	E	L	A	E	X	S	T	A	A	P	D	F	R	I	V	W	D	N	A	Y	A	L	H	T	L	S	D	E	F	P	I	V	H	N	V	I	E	F	A	Q	A	A	G	N
Template Known Secondary structure									T	T	S	T	T									S	S		T	T	T																		S	S	T	T								T	T	T	T		B	S	S	S																T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.				.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																																													.	.	.
Query SS confidence																																																													.	.	.
Query Sequence		R	E	R	A	V	A	V	S	S	F	G	K	T	Y	H	M	T	G	W	K	V	G	Y	C	V	A	P	A	P	I	S	A	E	I	R	K	V	H	Q	Y	L	T	F	S	V	N	T	P	A	Q	L	A	L	A	D	M	L	R	A	.	.	.	E	P	E	H	Y	L	A	L	P	D	F	Y	R	Q	K	R	D	I
Query Conservation																																																													.	.	.
Alig confidence																.																																													.	.	.
Template Conservation																.
Template Sequence		P	N	R	F	W	F	X	S	S	T	S	K	I	T	.	H	A	G	S	G	V	S	F	F	A	S	S	K	E	N	I	E	W	Y	A	S	H	A	N	V	R	G	I	G	P	N	K	L	N	Q	L	A	H	A	Q	F	F	G	D	V	A	G	L	K	A	H	X	L	K	H	A	A	S	L	A	P	K	F	E	R
Template Known Secondary structure		T	T								S	T	T	T	S	.		T	T	S	S																							S																S
Template Predicted Secondary structure																.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		302	.	.	.	.	.	.	.						310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.			.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.
Predicted Secondary structure										.	.	.	.	.																																																	.	.															.
Query SS confidence										.	.	.	.	.																																																	.	.															.
Query Sequence		L	V	N	A	L	N	E	S	.	.	.	.	.	R	L	E	I	L	P	C	E	G	T	Y	F	L	L	V	D	Y	S	A	V	S	T	L	D	D	V	E	F	C	Q	W	L	T	Q	E	H	G	V	A	A	I	P	L	S	V	F	C	A	.	.	D	P	F	P	H	K	L	I	R	L	C	F	A	K	.	K	E
Query Conservation										.	.	.	.	.																																																	.	.															.
Alig confidence										.	.	.	.	.																				.	.	.	.																										.	.															.
Template Conservation																																		.	.	.	.
Template Sequence		V	L	E	I	L	D	S	R	L	S	E	Y	G	V	A	K	W	T	S	P	T	G	G	Y	F	I	S	V	D	V	V	P	.	.	.	.	G	T	A	S	R	V	V	E	L	A	K	E	A	G	I	A	L	T	G	A	G	S	S	F	P	L	H	N	D	P	N	N	E	N	I	R	L	A	P	S	L	P	P	V
Template Known Secondary structure											G	G	G		S							S	B	S	S							S	T	.	.	.	.	T												T	T						T	T	T	T	S	G	G	G			T	T	S								S	S	S
Template Predicted Secondary structure																																		.	.	.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.					.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		374	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	L	L	A	A	A	E	R	L	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	L	E	V	A	X	D	G	F	A	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions