Job Description P77806 Confidence 99.97% Date Thu Jan 5 12:33:00 GMT 2012 Rank 101 Aligned Residues 330 % Identity 14% Template c3caiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein Resolution 1.80 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.												.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	H	Q	A	I	N	L	S	Q	G	F	P	D	F	D	G	P	R	Y	L	Q	E	R	L	A	H	H	V	A	Q	G	A	N	Q	Y	A	P	M	T	G	.	.	.	.	.	.	.	.	.	.	.	V	Q	A	L	R	E	A	I	A	Q	K	T	E	R	L	Y	G	Y	Q	P	D	A	D	S	D	I	T	V	T
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																	.	.	.								.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation															.																	.	.	.																																.	.	.	.	.	.	.
Template Sequence		G	D	G	W	V	H	F	D	A	P	A	G	M	.	L	I	P	D	S	V	A	T	T	V	S	T	A	F	R	R	.	.	.	S	G	A	S	T	V	G	A	H	P	S	A	R	R	S	A	A	V	L	D	A	A	R	E	A	V	A	D	L	V	N	.	.	.	.	.	.	.	A	D	P	G	G	V	V	L	G
Template Known Secondary structure		T	S	S					B	G	G	G			.																	.	.	.			S	S	S		S	S	S																						T	.	.	.	.	.	.	.			G	G	G
Template Predicted Secondary structure															.																	.	.	.																																.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.				.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.								.	.	.	.	80	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.					.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																.	.	.																.	.	.	.
Query SS confidence																.	.	.																.	.	.	.
Query Sequence		A	G	A	T	E	A	L	Y	A	A	I	T	A	L	.	.	.	V	R	N	G	D	E	V	I	C	F	D	P	S	Y	D	.	.	.	.	S	Y	A	P	A	I	A	L	S	G	G	I	V	K	R	M	A	L	Q	P	P	H	F	R	V	D	W	Q	E	F	A	A	L	L	S	E	R	T	R	L	V	I	L	N
Query Conservation																.	.	.																.	.	.	.
Alig confidence																.	.	.																.	.	.	.
Template Conservation
Template Sequence		A	D	R	A	V	L	L	S	L	L	A	E	A	S	S	S	R	A	G	L	G	Y	E	V	I	V	S	R	L	D	D	E	A	N	I	A	P	W	L	R	A	A	H	R	Y	G	A	K	V	K	W	A	E	V	D	I	E	T	G	E	L	P	T	W	Q	W	E	S	L	I	S	K	S	T	R	L	V	A	V	N
Template Known Secondary structure		S													T	G	G	G	G	B	T	T							T	T	S		G	G	G	T											B										T	T	T					G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	H	N	P	S	A	T	V	W	Q	Q	A	D	F	A	A	L	W	Q	A	I	A	G	H	E	I	F	V	I	S	D	E	V	Y	E	H	I	N	F	S	Q	Q	G	H	A	S	V	L	A	H	P	Q	L	R	E	R	A	V	A	V	S	S	F	G	K	T	Y	H	M	T	G	W	K	V	G	Y	C	V	A
Query Conservation
Alig confidence															.	.	.																												.	.	.	.	.	.	.	.																						.	.
Template Conservation															.	.	.																												.	.	.	.	.	.	.	.																						.	.
Template Sequence		S	A	S	G	T	L	G	G	V	T	D	L	R	.	.	.	A	M	T	K	L	V	H	D	V	G	A	L	V	V	V	D	H	S	A	A	A	P	Y	R	L	L	D	.	.	.	.	.	.	.	.	I	R	E	T	D	A	D	V	V	T	V	N	A	H	A	W	G	G	P	P	I	.	.	G	A	M	V	F	R
Template Known Secondary structure		S	B		T	T	T		B	B					.	.	.									T	T								T	T	T	T	T	T					.	.	.	.	.	.	.	.							S						G	G	G	G	T	S		S		.	.						S
Template Predicted Secondary structure															.	.	.																												.	.	.	.	.	.	.	.																						.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.									.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.
		251	.	.	.	.	.	.	.	.										260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.																.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	P	I	S	A	E	I	R	.	.	.	.	.	.	.	.	.	K	V	H	Q	Y	L	T	F	S	V	N	T	P	A	Q	L	A	L	A	D	M	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	P	E	H	Y	L	A	L	P	D	F	Y	R	Q	K	R	D	I	L	V	N	A	L
Query Conservation											.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	S	V	M	N	S	F	G	S	V	S	T	N	P	Y	A	T	G	P	A	R	L	E	I	G	V	H	Q	F	G	L	L	A	G	V	V	A	S	I	E	Y	L	A	A	L	D	E	S	A	R	G	S	R	R	E	R	L	A	V	S	M	Q	S	A	D	A	Y	L	N	R	V	F	D	Y	L	M	V	S	L
Template Known Secondary structure								T	S					S		T	T			G	G	G	G	G			S																			T	S	S	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		307	.		.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.						.	.	360	.	.	.	.	.	.	.	.	.	370			.	.	.	.	.	.
Predicted Secondary structure				.											.	.																																								.	.	.	.	.														.	.
Query SS confidence				.											.	.																																								.	.	.	.	.														.	.
Query Sequence		N	E	.	S	R	L	E	I	L	P	C	E	G	.	.	T	Y	F	L	L	V	D	Y	S	A	V	S	T	L	D	D	V	E	F	C	Q	W	L	T	Q	E	H	G	V	A	A	I	P	L	S	V	F	C	A	.	.	.	.	.	D	P	F	P	H	K	L	I	R	L	C	F	A	.	.	K	K	E	S	T	L
Query Conservation				.											.	.																																								.	.	.	.	.														.	.
Alig confidence				.											.	.										.	.	.												.																.	.	.	.	.														.	.
Template Conservation																										.	.	.												.
Template Sequence		R	S	L	P	L	V	M	L	I	G	R	P	E	A	Q	I	P	V	V	S	F	A	V	H	.	.	.	K	V	P	A	D	R	V	V	Q	R	L	.	A	D	N	G	I	L	A	I	A	N	T	G	S	R	V	L	D	V	L	G	V	N	D	V	G	G	A	V	T	V	G	L	A	H	Y	S	T	M	A	E	V
Template Known Secondary structure			T		T	T								S	S	B		S							T	.	.	.	T	B										.			T	T								S								T	T	T	T	T	T									T	T
Template Predicted Secondary structure																										.	.	.												.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.				.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		377	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	A	E	R	L	R	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Q	L	V	R	A	L	A	S	L
Template Known Secondary structure										T
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions