Job Description P77806 Confidence 99.90% Date Thu Jan 5 12:33:00 GMT 2012 Rank 180 Aligned Residues 311 % Identity 16% Template c3aemD_ PDB info PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate Resolution 2.20 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		E	R	L	A	H	H	V	A	Q	G	A	N	Q	Y	A	P	M	T	G	V	Q	A	L	R	E	A	I	A	Q	K	T	E	R	L	Y	G	Y	Q	P	D	A	D	S	D	I	T	V	T	A	G	A	T	E	A	L	Y	A	A	I	T	A	L	V	R	N	G	D	E	V	I	C	F	D	P	S	Y	D	S	.	.
Query Conservation																																																																																.	.
Alig confidence																																								.	.	.	.	.																																				.	.
Template Conservation																																								.	.	.	.	.
Template Sequence		Q	Q	G	A	D	L	F	M	G	K	G	E	G	H	I	Y	S	R	L	G	N	P	T	V	E	Q	F	E	E	M	V	C	S	I	E	G	A	A	.	.	.	.	.	G	S	A	A	F	G	S	G	M	G	A	I	S	S	S	T	L	A	F	L	Q	K	G	D	H	L	I	A	G	D	T	L	Y	G	C	T	V
Template Known Secondary structure									T	T		S	S			S	B	T	T	T																	T		S	.	.	.	.	.						S	S										T	T	T			T	T							S	S
Template Predicted Secondary structure																																								.	.	.	.	.
Template SS confidence
		1538	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.						.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.
				128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	Y	A	P	A	I	A	L	S	G	G	I	V	K	R	M	A	L	Q	P	P	H	F	R	V	D	W	Q	E	F	A	A	L	L	S	E	R	T	R	L	V	I	L	N	T	P	H	N	P	S	A	T	V	W	Q	Q	A	D	F	A	A	L	W	Q	A	I	A	G	H	E	I	F	V	I	S	D	E	V	Y
Query Conservation		.	.
Alig confidence		.	.																			.	.	.	.	.	.																															.	.	.
Template Conservation																						.	.	.	.	.	.																															.	.	.
Template Sequence		S	L	F	T	H	W	L	P	R	F	G	I	E	V	D	L	I	D	T	S	.	.	.	.	.	.	D	V	E	K	V	K	A	A	W	K	P	N	T	K	M	V	Y	L	E	S	P	A	N	P	T	C	K	V	S	D	.	.	.	I	K	G	I	A	V	V	C	H	E	R	G	A	R	L	V	V	D	A	T	F
Template Known Secondary structure											T	T								T	T	.	.	.	.	.	.	S										T	T								S	S		T	T	T						.	.	.												T								T	T
Template Predicted Secondary structure																						.	.	.	.	.	.																															.	.	.
Template SS confidence
		1613	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.							.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.				.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		E	H	I	N	F	S	Q	Q	G	H	A	S	V	L	A	H	P	Q	L	R	E	R	A	V	A	V	S	S	F	G	K	T	Y	H	M	T	G	W	K	V	G	Y	C	V	A	.	.	P	A	P	I	S	A	E	I	R	K	V	H	Q	Y	L	T	F	S	V	N	T	P	A	Q	L	A	L	A	D	M	L	R	A
Query Conservation																																															.	.
Alig confidence				.	.	.	.	.	.	.	.	.																																			.	.
Template Conservation				.	.	.	.	.	.	.	.	.
Template Sequence		T	S	.	.	.	.	.	.	.	.	.	P	C	F	L	K	P	L	E	L	G	A	D	I	A	L	H	S	V	S	K	Y	I	N	G	H	G	D	V	I	G	G	V	S	S	A	K	T	A	E	D	I	A	T	I	K	F	Y	R	K	D	A	G	S	L	M	A	P	M	D	A	F	L	C	A	R	G	M	K	T
Template Known Secondary structure		T		.	.	.	.	.	.	.	.	.	T	T	T			G	G	G	G	T		S						T	T	T	T	T	T		S	S	S									S	S																															T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.
Template SS confidence
		1684	.										.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.															.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	P	E	H	Y	L	A	L	P	D	F	Y	R	Q	K	R	D	I	L	V	N	A	L	N	E	S	R	L	E	I	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	E	G	T	Y	F	L	L	V	D	Y	S	A	V	S	T	L	D	D	V	E	F	C	Q	W	L	T	Q	E	H	G	V	A	A
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation																																																												.	.	.
Template Sequence		L	P	I	R	M	Q	I	H	M	E	N	G	L	K	V	A	K	F	L	E	Q	H	E	K	I	V	K	V	N	H	P	G	L	E	S	F	P	G	H	D	I	A	K	K	Q	M	T	G	Y	G	S	T	F	L	F	E	M	K	.	.	.	S	F	E	A	A	K	K	L	M	E	H	L	K	V	C	T	L	A	V
Template Known Secondary structure																						T		T	T							T	T	S	T	T	S	T	T									S	S			S							S	.	.	.	S									T	S		S	S	S				S
Template Predicted Secondary structure																																																												.	.	.
Template SS confidence
		1755	.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.				.	.	.	.	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.
		350	.	.	.	.	.	.	.	.	.	360	.																				.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query Sequence		I	P	L	S	V	F	C	A	D	P	F	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	K	L	I	R	L	C	F	A	K	.	K	E	S	T	L	L	A	A	A	E	R	L	R	Q	L
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		S	L	G	C	V	D	T	L	I	E	H	P	A	S	M	T	H	A	A	V	P	E	N	I	M	R	K	Q	G	I	T	P	E	L	V	R	I	S	V	G	I	E	N	V	D	D	I	I	A	D	L	K	Q	A	L	E	L
Template Known Secondary structure						S	S						T	T	T	T	T	T	T	T	S									T			T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		1832	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions