Job Description P77806 Confidence 100.00% Date Thu Jan 5 12:33:00 GMT 2012 Rank 87 Aligned Residues 330 % Identity 15% Template c2z9wA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal Resolution 1.70 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	H	Q	A	I	N	L	S	Q	G	F	P	D	F	D	G	P	R	Y	L	Q	E	R	L	A	H	H	V	A	Q	G	A	N	Q	Y	A	P	M	T	G	V	Q	A	L	R	E	A	I	A	Q	K	T	E	R	L	Y	G	Y	Q	P	D	A	D	S	D	I	T	V	T	A	G	A	T	E	A	L	Y	A	A
Query Conservation
Alig confidence													.	.																	.	.	.	.	.																													.	.	.
Template Conservation													.	.																	.	.	.	.	.																													.	.	.
Template Sequence		H	A	D	P	V	I	T	L	T	A	G	.	.	P	V	N	A	Y	P	E	V	L	R	G	L	G	R	T	V	.	.	.	.	.	L	Y	D	Y	D	P	A	F	Q	L	L	Y	E	K	V	V	D	K	A	Q	K	A	M	R	L	S	N	K	.	.	.	P	V	I	L	H	G	E	P	V	L	G	L	E	A	A
Template Known Secondary structure		T	S			S					S	S	.	.	S											T	T	S			.	.	.	.	.			T	T	S																		T	T		S	S		.	.	.					S	S		T
Template Predicted Secondary structure													.	.																	.	.	.	.	.																													.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.			.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.				.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																					.	.																							.
Query SS confidence																					.	.																							.
Query Sequence		I	T	A	L	V	R	N	G	D	E	V	I	C	F	D	P	S	Y	D	.	.	S	Y	A	P	A	I	A	L	S	G	G	I	V	K	R	M	A	L	Q	P	P	H	.	F	R	V	D	W	Q	E	F	A	A	L	L	S	E	R	T	R	L	V	I	L	N	T	P	H	N	P	S	A	T	V	W	Q	Q	A	D
Query Conservation																					.	.																							.
Alig confidence																					.	.																							.																																				.
Template Conservation																																																																																	.
Template Sequence		A	A	S	L	I	S	P	D	D	V	V	L	N	L	A	S	G	V	Y	G	K	G	F	G	Y	W	A	K	R	Y	S	P	H	L	L	E	I	E	V	P	Y	N	E	A	I	D	P	Q	A	V	A	D	M	L	K	A	H	P	E	I	T	V	V	S	V	C	H	H	D	T	P	S	G	T	I	N	P	I	D	.
Template Known Secondary structure								T	T								S	S															S									T	T	S															T	T								S			G	G	G	T							.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		F	A	A	L	W	Q	A	I	A	G	H	E	I	F	V	I	S	D	E	V	Y	E	H	I	N	F	S	Q	Q	G	H	A	S	V	L	A	H	P	Q	L	R	E	R	A	V	A	V	S	S	F	G	K	T	Y	H	M	T	G	W	K	V	G	Y	C	V	A	P	A	P	I	S	A	E	I	R	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence		.	.																							.	.	.	.	.	.	.	.																								.																				.	.	.	.	.
Template Conservation		.	.																							.	.	.	.	.	.	.	.																								.
Template Sequence		.	.	A	I	G	A	L	V	S	A	H	G	A	Y	L	I	V	D	A	V	S	S	F	G	.	.	.	.	.	.	.	.	G	M	K	T	H	P	E	D	C	K	A	D	I	Y	V	T	G	P	N	K	C	L	G	.	A	P	P	G	L	T	M	M	G	V	S	E	R	A	W	A	K	M	K	A	N	P	L	A
Template Known Secondary structure		.	.									T	T								T	T	T	B	T	.	.	.	.	.	.	.	.	T	B	S			G	G	G	T	T		S						S	S	S	T	T		.			S																	T		T	T	S
Template Predicted Secondary structure		.	.																							.	.	.	.	.	.	.	.																								.
Template SS confidence
				156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.									.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
																	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.																																		.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.																																		.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	H	Q	Y	L	T	F	S	V	N	T	P	A	Q	L	A	L	A	D	M	L	R	A	E	P	E	H	.	Y	L	A	L	P	D	F	Y	R	Q	K	R	D	I	L	V	N	A	L	N	E	S	R	L	E	I	L	P	C	E	G	T	Y	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.																																		.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.																																		.	.	.
Template Conservation
Template Sequence		P	R	A	S	M	L	S	I	V	D	W	E	N	A	W	S	R	D	K	P	F	P	F	T	P	S	V	S	E	I	N	G	L	D	V	A	L	D	L	Y	L	N	E	G	P	E	A	V	W	A	R	H	A	L	T	A	K	A	M	R	A	G	V	T	A	M	G	L	S	V	W	A	A	S	D	S	I	A	S	P
Template Known Secondary structure				S	S	T	T		S	G	G	G	T	T	T	T	S	T	T	S			S	S																																												T			B	S	S	S	S	G	G	G	B		S
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
			321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.				.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure		.																																																	.	.	.
Query SS confidence		.																																																	.	.	.
Query Sequence		.	F	L	L	V	D	Y	S	A	V	S	T	L	D	D	V	E	F	C	Q	W	L	T	Q	E	H	G	V	A	A	I	P	L	S	V	F	C	A	D	P	F	P	H	K	L	I	R	L	C	.	.	.	F	A	K	K	E	S	T	L	L	A	A	A	E	R	L	R	Q
Query Conservation		.																																																	.	.	.
Alig confidence		.									.	.																										.	.	.	.										.	.	.
Template Conservation											.	.																										.	.	.	.
Template Sequence		T	T	T	A	V	R	T	P	D	.	.	G	V	D	E	K	A	L	R	Q	A	A	R	A	R	Y	G	V	V	F	S	S	G	R	G	E	.	.	.	.	T	L	G	K	L	T	R	I	G	H	M	G	P	T	A	Q	P	I	Y	A	I	A	A	L	T	A	L	G	G
Template Known Secondary structure		S								T	.	.	T																			B				G	G	.	.	.	.	G	T	T	T								G	G	G		S
Template Predicted Secondary structure											.	.																										.	.	.	.
Template SS confidence
		305	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.					.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions