Job Description P77806 Confidence 99.82% Date Thu Jan 5 12:33:00 GMT 2012 Rank 214 Aligned Residues 336 % Identity 15% Template c2a7vA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: human mitochondrial serine hydroxymethyltransferase 2 Resolution 2.04 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		S	K	L	P	Q	L	G	T	T	I	F	T	Q	M	S	A	L	A	Q	Q	.	H	Q	A	I	N	L	S	Q	G	F	P	D	F	D	G	P	R	Y	L	Q	E	R	L	A	H	H	V	A	Q	G	A	N	Q	Y	A	P	M	T	G	V	Q	A	L	R	E	A	I	A	Q	K	T	E	R	L	Y	G	Y	Q	P
Query Conservation																						.
Alig confidence																						.												.	.																	.	.	.					.	.
Template Conservation																																		.	.																	.	.	.					.	.
Template Sequence		E	S	L	S	D	S	D	P	E	M	W	E	L	L	Q	R	E	K	D	R	Q	C	R	G	L	E	L	I	A	S	E	N	.	.	F	C	S	R	A	A	L	E	A	L	G	S	C	L	N	N	.	.	.	K	Y	S	E	.	.	G	V	D	E	I	E	L	L	C	Q	R	R	A	L	E	A	F	D	L	D	P
Template Known Secondary structure																									S					T	T			.	.											T	S	G	G	G	T	.	.	.					.	.			T														T	T			T
Template Predicted Secondary structure																																		.	.																	.	.	.					.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.				.	80	.	.			.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	D	S	D	I	T	V	T	A	G	A	T	E	A	L	Y	A	A	I	T	A	L	V	R	N	G	D	E	V	I	C	F	D	P	S	Y	D	S	Y	A	P	A	I	A	L	S	G	G	I	V	K	R	M	A	L	Q	P	P	H	F	R	V	D	W	Q	E	F	A	A	L	L	S	E	R	T	R	L	V	I
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	W	G	V	N	V	Q	P	Y	S	G	S	P	A	N	L	A	V	Y	T	A	L	L	Q	P	H	D	R	I	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	K	L	N	P	K	T	G	L	I	D	Y	N	Q	L	A	L	T	A	R	L	F	R	P	R	L	I
Template Known Secondary structure		T	T								S	S															S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B		T	T	T		S	B															S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.																						.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	T	P	H	N	P	S	A	T	V	W	Q	Q	A	D	F	A	A	L	W	Q	A	I	A	G	H	E	I	F	V	I	S	D	E	V	Y	E	H	I	N	F	S	Q	Q	G	H	A	S	V	L	A	H	P	Q	L	R	E	R	A	V	A	V	S	S	F	G	K	T	Y	H	M	T	G	W	K	V	G	Y	C
Query Conservation
Alig confidence								.							.	.	.																																								.	.	.	.	.											.	.
Template Conservation								.							.	.	.																																								.	.	.	.	.											.	.
Template Sequence		I	A	G	T	S	A	.	Y	A	R	L	I	D	.	.	.	Y	A	R	M	R	E	V	C	D	E	V	K	A	H	L	L	A	D	M	A	H	I	S	G	L	V	A	A	K	V	I	P	S	P	F	K	H	A	D	.	.	.	.	.	I	V	T	T	T	T	H	K	T	L	.	.	R	G	A	R	S	G	L	I
Template Known Secondary structure						S	S	.			S				.	.	.											T	T								G	G	G						T	T	S	S			G	G	G	T		S	.	.	.	.	.						S	S	G	G	G	.	.		S		S
Template Predicted Secondary structure								.							.	.	.																																								.	.	.	.	.											.	.
Template SS confidence
		206	.	.	.	210	.		.	.	.	.	.	.				.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.						.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.
		249	250	.	.																.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.			.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Query Sequence		V	A	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	S	A	E	I	R	K	V	H	Q	Y	L	T	F	S	V	N	T	P	A	Q	L	A	L	A	D	M	L	R	A	.	.	E	P	E	H	Y	L	A	L	P	D	F	Y	R	Q	K	R	D	I	L	V	N	A	L	N	E	S	R	L
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Conservation
Template Sequence		F	Y	R	K	G	V	K	A	V	D	P	K	T	G	R	E	I	P	Y	T	F	E	D	R	I	N	F	A	V	F	P	S	L	Q	G	G	P	H	N	H	A	I	A	A	V	A	V	A	L	K	Q	A	C	T	P	M	F	R	E	Y	S	L	Q	V	L	K	N	A	R	A	M	A	D	A	L	L	E	R	G	Y
Template Known Secondary structure						S						T	T	T																	T	T	T	T			S																		S																								T	T
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		312	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.							370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure								.																																					.																	.	.	.	.	.	.
Query SS confidence								.																																					.																	.	.	.	.	.	.
Query Sequence		E	I	L	P	C	E	.	G	T	Y	F	L	L	V	D	Y	S	A	V	S	T	L	D	D	V	E	F	C	Q	W	L	T	Q	E	H	G	V	A	A	I	P	L	S	.	V	F	C	A	D	P	F	P	H	K	L	I	R	L	C	F	.	.	.	.	.	.	A	K	K	E	S	T	L	L	A	A	A	E	R	L
Query Conservation								.																																					.																	.	.	.	.	.	.
Alig confidence								.													.							.																	.																	.	.	.	.	.	.
Template Conservation																					.							.
Template Sequence		S	L	V	S	G	G	T	D	N	H	L	V	L	V	D	L	R	P	K	.	G	L	D	G	A	R	.	A	E	R	V	L	E	L	V	S	I	T	A	N	K	N	T	C	P	G	D	R	S	A	I	T	P	G	G	L	R	L	G	A	P	A	L	T	S	R	Q	F	R	E	D	D	F	R	R	V	V	D	F	I
Template Known Secondary structure				G	G	G	S		S	S	S							T	T	T	.	T						.								T	T									T	T				S	S	S		S						S						T	T
Template Predicted Secondary structure																					.							.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		384	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		433	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions