Job Description P77806 Confidence 99.71% Date Thu Jan 5 12:33:00 GMT 2012 Rank 231 Aligned Residues 300 % Identity 17% Template c1c4kA_ PDB info PDB header:lyase Chain: A: PDB Molecule:protein (ornithine decarboxylase); PDBTitle: ornithine decarboxylase mutant (gly121tyr) Resolution 2.70 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		P	M	T	G	V	Q	A	L	R	E	A	I	A	Q	K	T	E	R	L	Y	G	Y	Q	P	D	A	D	S	D	I	T	V	T	A	G	A	T	E	A	L	Y	A	A	I	T	A	L	V	R	N	G	D	E	V	I	C	F	D	P	S	Y	D	S	Y	A	P	.	A	I	A	L	S	G	G	I	V	K	R	M	A
Query Conservation																																																																				.
Alig confidence																		.	.	.			.	.	.	.																																										.
Template Conservation																		.	.	.			.	.	.	.
Template Sequence		I	H	E	G	P	A	V	A	A	E	K	H	A	A	R	V	.	.	.	Y	N	.	.	.	.	A	D	K	T	Y	F	V	L	G	G	S	S	N	A	N	N	T	V	T	S	A	L	V	S	N	G	D	L	V	L	F	D	R	N	N	H	K	S	V	Y	N	S	A	L	A	M	A	G	G	R	P	V	Y	L	Q
Template Known Secondary structure		T	T	B	T													.	.	.	T	T	.	.	.	.		S						S	S																T	T							T	T										T	T	T	T
Template Predicted Secondary structure																		.	.	.			.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.				.	.					.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		144	.	.	.	.	.	150	.										.	.	.	.	.	.	.	.	160	.	.	.	.											.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	P	P	H	F	R	V	.	.	.	.	.	.	.	.	.	D	W	Q	E	F	A	A	L	L	S	E	R	T	.	.	.	.	.	.	.	.	.	.	R	L	V	I	L	N	T	P	H	N	P	S	A	T	V	W	Q	Q	A	D	F	A	A	L	W	Q	A	I	A	G	H	E	I	F	V	I	S	D	E	V
Query Conservation										.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.											.							.	.	.
Template Conservation																																																				.							.	.	.
Template Sequence		T	N	R	N	P	Y	G	F	I	G	G	I	Y	D	S	D	F	D	E	K	K	I	R	E	L	A	A	K	V	D	P	E	R	A	K	W	K	R	P	F	R	L	A	V	I	Q	L	G	T	Y	.	D	G	T	I	Y	N	.	.	.	A	H	E	V	V	K	R	I	G	H	L	C	D	Y	I	E	F	D	S	A
Template Known Secondary structure						T	T								G	G	G	S									T	T	T	S	S					T		S			B	S						S	B		T	.	T	S					.	.	.									G	G	G	B	S							T
Template Predicted Secondary structure																																																				.							.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.				.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		205	.	.	.	.						210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.												250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	E	H	I	N	.	.	.	.	.	F	S	Q	Q	G	H	A	S	V	L	A	H	P	Q	L	R	E	R	A	V	A	V	S	S	F	G	K	T	Y	H	M	T	G	W	K	V	G	Y	C	V	.	.	.	.	.	.	.	.	.	.	.	A	P	A	P	I	S	A	E	I	R	K	V	H	Q	Y	L	T	F	S
Query Conservation							.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation																																																																												.	.
Template Sequence		W	V	G	Y	E	Q	F	I	P	M	M	R	N	S	S	P	L	L	I	D	D	L	G	P	E	D	P	G	I	I	V	V	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	L	R	Y	C	D	H	K	H	F	N	N	S	F	N	L	F	.	.	M	S	T	S
Template Known Secondary structure		T			G	G	G	S	S	G	G	G	G	G	G		T	T	S						T	T	S													S	S			T	T									G	G	G	T	T	S	T	T															.	.	S		S	S
Template Predicted Secondary structure																																																																												.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.			.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310			.	.	.	.	.	.	.
Predicted Secondary structure																					.																								.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.																								.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	N	T	P	A	Q	L	A	L	A	D	M	L	R	A	E	P	E	H	.	Y	L	A	L	P	D	F	Y	R	Q	K	R	D	I	L	V	N	A	L	N	E	S	R	.	.	L	E	I	L	P	C	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.																								.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																								.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	F	Y	P	M	Y	A	A	L	D	V	N	A	A	M	Q	E	G	E	A	G	R	K	L	W	H	D	L	L	I	T	T	I	E	A	R	K	K	L	I	K	A	G	S	M	F	R	P	F	V	P	P	V	V	N	G	K	K	W	E	D	G	D	T	E	D	M	A	N	N	I	D	Y	W	R	F	E	K	G	A
Template Known Secondary structure																		S																									T	T		S	S			S	S		S			T	T			G	G	G	S						T	T		G	G	G	G	B			T	T
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
																	318	.	320	.	.	.	.	.	.	.	.	.	330										.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370			.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.																																									.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.																																									.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	Y	F	L	L	V	D	Y	S	A	V	S	.	.	.	.	.	.	.	.	.	T	L	D	D	V	E	F	C	Q	W	L	T	Q	E	H	G	V	A	A	I	P	L	S	V	F	C	A	D	P	F	P	H	K	L	I	R	L	C	F	A	.	.	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.																																									.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.												.								.	.	.	.	.	.	.	.														.	.
Template Conservation																																																		.								.	.	.	.	.	.	.	.
Template Sequence		K	W	H	A	Y	E	G	Y	G	D	N	Q	Y	Y	V	D	P	N	K	F	M	L	T	T	P	G	I	N	P	E	T	G	D	Y	E	D	F	G	V	P	A	T	I	V	A	N	Y	L	.	R	D	H	G	I	I	P	.	.	.	.	.	.	.	.	E	K	S	D	L	N	S	I	L	F	L	M	T	P	A	E
Template Known Secondary structure		T	T	T			T	T			T	T						T	T							S	S			T	T	T	T				S	S												.			T	T				.	.	.	.	.	.	.	.	S				S	S								T	T
Template Predicted Secondary structure																																																		.								.	.	.	.	.	.	.	.
Template SS confidence
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.		.	.	.	.	.	530	.									.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	S	T	L	L	A	A	A	E	R	L	R	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	A	K	M	N	N	L	I	T	Q	L	L	Q	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		548	.	550	.	.	.	.	.	.	.	.	.	560	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions