Return to main results Retrieve Phyre Job Id

Job DescriptionP10346
Confidence100.00%DateWed Jan 25 15:20:37 GMT 2012
Rank58Aligned Residues219
% Identity27%Templatec3pihA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30.........40.... .....50.........60.........70.........80......
Predicted Secondary structure 











.























.........
Query SS confidence 



























.









































. . . . . . . . .
Query Sequence  LHNIDLNIAQGEVVVIIGPSGSGKSTLL. RCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQF. . . . . . . . .
Query Conservation 
  

  
  


  
 
 








.  
 
      
 
 
 
                
  
 
  .........
Alig confidence 



























.



























..











.........
Template Conservation 
  
   
  
   

 
 








   
   
                     ..    
  
 
 

    

  
Template Sequence  LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHE. . NIDKMIAIDQSPIGRTPRSNP
Template Known Secondary structure 

SSSS
STTSST








S
GG..G


S





TT

Template Predicted Secondary structure 




























..









Template SS confidence 















































































   600.........610.........620.........630.........640.........650...... ...660.........670.......
 
   87..90
Predicted Secondary structure  ............................................................................



Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .



Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YLFP
Query Conservation  ............................................................................ 
  
Alig confidence  ............................................................................



Template Conservation         
 

 

     
          
 
   
      
 
        
           
 
     
 
   
Template Sequence  ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK
Template Known Secondary structure  SSTTSSS

GGGG
TTSTTTB
TTTTTSS

TTS


TTTTTS
B
TTGGG

BT
Template Predicted Secondary structure 












































Template SS confidence 















































































   678.680.........690.........700.........710.........720.........730.........740.........750.......
 
   91........100... ......110.........120........ .130.........140.........150...... ...160.....
Predicted Secondary structure 


.







.













...




Query SS confidence 












.
























.



























. . .








Query Sequence  HLTALENVMFGPL. RVRGANKEEAEKLARELLAKVGLAE. RAHHYPSELSGGQQQRVAIARALAVKPK. . . MMLFDEPTS
Query Conservation    
  
 
     .                 
   

  .        

 


 
  

 

   
 ...






  
Alig confidence 












.
























.



























...








Template Conservation     
   
  

 

             
  
  


    
      








 

 

   
    








Template Sequence  GKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTV
Template Known Secondary structure  TB
SSBTTT
TTGGGSBTT

STT

TS


SSSTTT
Template Predicted Secondary structure 



























Template SS confidence 















































































   758.760.........770.........780.........790.........800.........810.........820.........830.......
 
   166...170.........180.........190.........200......... 210.........220.........230.........
Predicted Secondary structure 










......







Query SS confidence 











































. . . . . .





























Query Sequence  ALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFI. . . . . . DKGRIAEDGNPQVLIKNPPSQRLQEFLQHV
Query Conservation 


          
      
 


  

         
 
  
......  
 
   
  
 
            
  
Alig confidence 



































.






......



















.








Template Conservation 


  
   
   
  
   
 








  
  .

 

 


  
   
 

  


 

      . 
   
   
Template Sequence  GLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN. ADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHS. YTGRFLKNV
Template Known Secondary structure  T

TT



TT.
SSSSGGG

SS
TT
.TTT
Template Predicted Secondary structure 







.
















.
Template SS confidence 















































































   838.840.........850.........860.........870... ......880.........890.........900...... ...910.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions