Job Description P10346 Confidence 98.58% Date Wed Jan 25 15:20:37 GMT 2012 Rank 85 Aligned Residues 137 % Identity 23% Template c2o8dB_ PDB info PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh6; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g du mispair Resolution 3.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.							.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.										.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Query Sequence		M	I	E	F	K	N	V	S	K	H	F	G	P	T	Q	V	L	H	N	I	D	L	N	.	.	.	.	.	.	I	A	Q	G	E	V	V	V	I	I	G	P	S	G	S	G	K	S	T	L	L	R	C	I	N	.	.	.	.	.	.	.	.	.	K	L	E	E	I	T	S	G	D	L	I	V	D	G	L	K	V
Query Conservation																									.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	L	E	L	K	G	S	R	H	P	C	G	D	D	F	I	P	N	D	I	L	I	G	C	E	E	E	E	Q	E	N	K	A	Y	C	V	L	V	T	G	P	N	M	G	G	K	S	T	L	M	R	Q	A	G	L	L	A	V	M	A	Q	M	G	C	Y	V	P	A	E	V	C	R	L	T	P	I	D	R	V	F
Template Known Secondary structure																												S	T	T										B			T	T	S	S																T	T	T			B	S	S	S								S	B
Template Predicted Secondary structure
Template SS confidence
		1088	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	P	K	V	D	E	R	L	I	R	Q	E	A	G	M	V	F	Q	Q	F	Y	L	F	P	H	L	T	A	L	E	N	V	M	F	G	P	L	R	V	R	G	A	N	K	E	E	A	E	K	L	A	R	E	L	L	A	K	V	G	L	A	E	R	A	H	H	Y	P	S	E	L	S	G	G	Q	Q	Q	R	V
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	R	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	F	V	E	L	S
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1175	.	.	.																																																																					.	1180	.	.	.	.	.	.
		146	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure									.	.																										.									.
Query SS confidence									.	.																										.									.
Query Sequence		A	I	A	R	A	L	A	.	.	V	K	P	K	M	M	L	F	D	E	P	T	S	A	L	D	P	E	L	R	H	E	V	L	K	.	V	M	Q	D	L	A	E	E	.	G	M	T	M	V	I	V	T	H	E	I	G	F	A	E	K	V	A	S	R
Query Conservation									.	.																										.									.
Alig confidence									.	.																										.									.
Template Conservation
Template Sequence		E	T	A	S	I	L	M	H	A	T	A	H	S	L	V	L	V	D	E	L	G	R	G	T	A	T	F	D	G	T	A	I	A	N	A	V	V	K	E	L	A	E	T	I	K	C	R	T	L	F	S	T	H	Y	H	S	L	V	E	D	Y	S	Q	N
Template Known Secondary structure												T	T								S		T	T	S																			T	S																	T	S	S
Template Predicted Secondary structure
Template SS confidence
		1196	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions