|   |
44 | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | R | S | F | F | Y | T | I | C | S | S | E | Q | Q | E | S | I | T | D | H | H | S | L | A | E | I | C | Q | K | F | N | I | L | P | E | H | V | V | I | E | Q | V | D | I | K | E | V | V | S | E | Q | R | L | L | R | Q | L | I | H | H | E | M | N | R | Q | D | T | L | V | I | P | D | L | S | C | L | G | R | T | V |
Query Conservation |   |
|   |   |   |   |
|   |
|
|
|
|   |   |
|   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |
|
|   |
|   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |
|
|   |   |   |
|   |   |
|
|
|
|
|
|   |   |
|
|
|
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |
|   |
|
|
|
|   |   |
|
|   |
|   |
| . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |
|   |
|
|
|   |   |   |
|
|
|
|
|   |   |
Template Sequence |   |
M | A | L | F | G | Y | A | R | V | S | T | S | Q | Q | S | L | D | I | Q | . |
. |
. |
. |
V | R | A | L | K | D | A | G | V | K | A | N | R | I | F | T | D | K | A | S | . |
. |
. |
. |
. |
. |
D | R | K | G | L | D | L | L | R | M | . |
K | V | K | E | G | D | V | I | L | V | K | K | L | D | R | L | G | R | D | T |
Template Known Secondary structure |   |
|
|
|
|  |  |  |  |  |
| S | S | S |
| T |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  | T |
|
| G | G | G |  |  |  |  |  |
|
| . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  | . |  |
|
| T | T |
|  |  |  |  | S | S | T | T | T | T |
| S | S |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  | . | . | . | . |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
| . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  | . |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | |
|
|
|
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
40 | . | . | . | . | . | . | . | . | . | |
50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . |
  |
  |   |
124 | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | |
|
|
|
170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | D | L | Q | N | I | L | F | F | C | L | Q | K | E | M | F | I | Y | S | Y | H | P | A | S | R | I | E | P | S | A | E | S | C | L | S | F | L | I | A | R | Q | D | T | I | D | I | . |
. |
. |
. |
H | N | L | K | S | T | K | S | R | Y | R | H | V | K | K | K | L |
Query Conservation |   |
  |
|
|
|   |
|
|   |   |
|   |
|
|
|
|   |
|   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |
|
|   |
|   | . | . | . | . |
|
|
|
|   |
|
|   |   |
|
|
|   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |
Template Sequence |   |
A | D | M | I | Q | L | I | K | E | F | D | A | Q | G | V | S | I | R | F | I | D | D | S | I | D | T | S | S | A | M | G | R | M | V | V | T | I | L | S | A | V | A | Q | A | E | R | Q | R | I | L | Q | R | T | N | E | G | R | Q | E | A | M | A | K | G | V | V | F |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  | T | T | T |
|
| B | T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
74 | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
  |