|   |
43 | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | |
|
|
|
. | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | |
|
|
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  | . | . | . |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | M | R | S | F | F | Y | T | I | C | S | S | E | Q | Q | E | . |
. |
. |
. |
S | I | T | D | H | H | S | L | A | E | I | C | Q | K | F | N | I | L | P | E | H | V | V | I | E | Q | V | D | I | K | E | V | V | S | E | Q | R | L | L | R | Q | . |
. |
. |
L | I | H | H | E | M | N | R | Q | D | T | L | V | I | P | D |
Query Conservation |   |
  |
|   |   |   |   |
|   |
|
|
|
|   |   |
|   | . | . | . | . |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |
|
|   |
|   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   | . | . | . |
|
|   |   |   |
|   |   |
|
|
|
|
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |
|   |
|
|
|
|   |   |
|   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |   |
Template Sequence |   |
K | I | K | V | Y | L | Y | T | R | V | S | T | S | I | Q | I | E | G | Y | S | L | E | A | Q | K | S | R | M | K | A | F | A | I | Y | N | D | Y | E | I | V | G | E | Y | E | D | A | G | K | S | G | K | S | I | E | G | R | I | Q | F | N | R | M | M | E | D | I | K | S | G | K | D | G | V | S | F | V | L | V | F | K |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |
| S | S |
|  |  |  |  | G | G | G |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  |  |
|
|
| S | S | S | S | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  | T |
| T | T |
|
| S |  |  |  |  | S |
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . |
  |
  |   |
116 | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | |
|
|
|
170 | . | . | . | . | . | . | . | . | . | 180 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | S | C | L | G | R | T | V | E | D | L | Q | N | I | L | F | F | C | L | Q | K | E | M | F | I | Y | S | Y | H | P | A | S | R | I | E | P | S | A | E | S | C | L | S | F | L | I | A | R | Q | D | T | I | D | I | . |
. |
. |
. |
H | N | L | K | S | T | K | S | R | Y | R | H | V |
Query Conservation |   |
|
|
|
|
|
|
|   |   |
|
|
|   |
|
|   |   |
|   |
|
|
|
|   |
|   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |
|
|   |
|   | . | . | . | . |
|
|
|
|   |
|
|   |   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |
|   |   |   |   |   |   |   |   | . | . |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|
|
|
Template Sequence |   |
L | S | R | F | A | R | N | A | A | D | V | L | S | T | L | Q | I | M | Q | D | Y | G | V | N | L | I | C | V | E | D | G | I | D | . |
. |
S | S | K | D | K | L | M | I | S | V | L | S | A | V | A | E | I | E | R | E | N | I | R | I | Q | T | M | E | G | C | I | Q | K | A | R | E |
Template Known Secondary structure |   |
G | G | G | T |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  | T | T | T | T |  |  | . | . | G | G | G |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
85 | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | |
|
. | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . |
  |