Job Description P0AFD1 Confidence 29.28% Date Thu Jan 5 11:25:57 GMT 2012 Rank 186 Aligned Residues 53 % Identity 9% Template c3t72o_ PDB info PDB header:transcription/dna Chain: O: PDB Molecule:pho box dna (strand 1); PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex Resolution 4.33 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		A	A	E	R	E	A	I	E	H	E	M	H	H	Y	E	D	P	R	A	A	S	I	E	A	L	K	I	V	Q	K	Q	R	G	W	V	.	.	P	D	G	A	I	H	A	I	A	D	V	L	G	I	P	A	S	D	V	E	G	V	A	T
Query Conservation																																					.	.
Alig confidence																							.	.	.	.	.	.									.	.
Template Conservation																							.	.	.	.	.	.
Template Sequence		E	S	L	R	A	A	T	H	D	V	L	A	G	L	T	A	R	E	A	K	V	.	.	.	.	.	.	L	R	M	R	F	G	I	D	M	N	T	D	Y	T	L	E	E	V	G	K	Q	F	D	V	T	R	E	R	I	R	Q	I	E	A
Template Known Secondary structure															S								.	.	.	.	.	.	T	T	T	T	T	S	S	S	S		S												S	S
Template Predicted Secondary structure																							.	.	.	.	.	.
Template SS confidence
		538	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.							.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions