Job Description P0AFD1 Confidence 58.36% Date Thu Jan 5 11:25:57 GMT 2012 Rank 21 Aligned Residues 60 % Identity 18% Template c2xsdC_ PDB info PDB header:transcription/dna Chain: C: PDB Molecule:pou domain, class 3, transcription factor 1; PDBTitle: crystal structure of the dimeric oct-6 (pou3f1) pou domain2 bound to palindromic more dna Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.					.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.
Query SS confidence																												.	.	.	.
Query Sequence		E	A	F	E	L	S	A	A	E	R	E	A	I	E	H	E	M	H	H	Y	E	D	P	R	A	A	.	.	.	.	S	I	E	A	L	K	I	V	Q	K	Q	R	G	W	V	P	D	G	A	I	H	A	I	A	D	V	L	G	I	P	A	S	D	V
Query Conservation																												.	.	.	.
Alig confidence																												.	.	.	.
Template Conservation
Template Sequence		E	A	L	Q	L	S	F	K	N	M	C	K	L	K	P	L	L	N	K	W	L	E	E	T	D	S	I	E	V	G	V	K	G	A	L	E	S	H	F	L	K	C	P	K	P	S	A	H	E	I	T	G	L	A	D	S	L	Q	L	E	K	E	V	V
Template Known Secondary structure			T	T		S	B																																					S	S														T
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions