Job Description P0AFD1 Confidence 43.65% Date Thu Jan 5 11:25:57 GMT 2012 Rank 82 Aligned Residues 63 % Identity 16% Template c1or7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma-e factor; PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea Resolution 2.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	Q	P	Q	T	E	A	F	E	L	S	A	A	E	R	E	A	I	E	H	E	M	H	H	Y	E	D	P	R	A	A	S	I	E	A	L	K	I	V	Q	K	Q	R	G	W	V	P	D	G	A	I	H	A	I	A	D	V	L	G	I	P	A	S	D	V	E	G	V	A	T
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.
Template Sequence		N	F	E	S	G	G	A	N	L	M	L	S	E	E	L	R	Q	I	V	F	R	T	I	E	S	L	P	E	D	L	R	M	A	I	T	L	R	.	.	.	.	.	.	.	.	E	L	D	G	L	S	Y	E	E	I	A	A	I	M	D	C	P	V	G	T	V	R	S	R	I	F
Template Known Secondary structure		S			S	S																					S												.	.	.	.	.	.	.	.		T	T											T	T	S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.									.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions