Job Description P0AFD1 Confidence 25.49% Date Thu Jan 5 11:25:57 GMT 2012 Rank 222 Aligned Residues 43 % Identity 9% Template c1jumB_ PDB info PDB header:transcription Chain: B: PDB Molecule:hypothetical transcriptional regulator in qaca PDBTitle: crystal structure of the multidrug binding transcriptional2 repressor qacr bound to the natural drug berberine Resolution 2.98 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	A	S	I	E	A	L	K	I	V	Q	K	Q	R	G	W	V	P	D	G	A	I	H	A	I	A	D	V	L	G	I	P	A	S	D	V	E	G	V	A	T	F	Y	S	Q	I	F	R	Q
Query Conservation
Alig confidence																					.															.	.	.	.	.	.
Template Conservation																					.															.	.	.	.	.	.
Template Sequence		K	D	K	I	L	G	V	A	K	E	L	F	I	K	N	G	Y	N	A	.	T	T	T	G	E	I	V	K	L	S	E	S	S	K	.	.	.	.	.	.	G	N	L	Y	Y	H	F	K	T	K
Template Known Secondary structure																T		T	T	T	.	S									T	T				.	.	.	.	.	.							S		S
Template Predicted Secondary structure																					.															.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.							.	.	.	40	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions