Job Description P15029 Confidence 6.41% Date Thu Jan 5 11:34:13 GMT 2012 Rank 6 Aligned Residues 193 % Identity 10% Template c3dh4A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Resolution 2.70 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	L	V	I	F	I	T	L	A	L	A	G	C	A	L	L	S	L	H	M	G	V	I	P	V	P	W	R	A	L	L	T	D	W	Q	A	G	H	E	H	Y	Y	V	L	M	E	Y	R	L	P	R	L	L	L	A	L	F	V	G	A	A	L	A	V	A	G	V	L	I	Q	G	I	V	R	N	P	L	A	S
Query Conservation
Alig confidence																																													.	.																						.	.	.	.	.	.
Template Conservation																																													.	.																						.	.	.	.	.	.
Template Sequence		K	G	V	V	F	A	A	L	A	A	A	I	V	S	S	L	A	S	M	L	N	S	T	A	T	I	F	T	M	D	I	Y	K	E	Y	I	S	P	D	S	G	D	H	.	.	K	L	V	N	V	G	R	T	A	A	V	V	A	L	I	I	A	C	L	I	A	.	.	.	.	.	.	P	M	L	G	G	I	G	Q
Template Known Secondary structure																																T							S		S		S	S	.	.																					G	.	.	.	.	.	.	G	G	G	G	G		S
Template Predicted Secondary structure																																													.	.																						.	.	.	.	.	.
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.			.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.							.	.	.	.	.	420	.	.
		83	.	.	.	.	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.
Query SS confidence										.	.	.	.
Query Sequence		P	D	I	L	G	V	N	H	.	.	.	.	A	A	S	L	A	S	V	G	A	L	L	L	M	P	S	L	P	V	M	V	L	P	L	L	A	F	A	G	G	M	A	G	L	I	L	L	K	M	L	A	K	T	H	Q	P	M	K	L	A	L	T	G	V	A	L	S	A	C	W	A	S	L	T	D	Y	L	M	L
Query Conservation										.	.	.	.
Alig confidence										.	.	.	.
Template Conservation
Template Sequence		A	F	Q	Y	I	Q	E	Y	T	G	L	V	S	P	G	I	L	A	V	F	L	L	G	L	F	W	K	K	T	T	S	K	G	A	I	I	G	V	V	A	S	I	P	F	A	L	F	L	K	F	M	P	L	S	M	P	F	M	D	Q	M	L	Y	T	L	L	F	T	M	V	V	I	A	F	T	S	L	S	T	S
Template Known Secondary structure											T	T	T															T	T																						T	S	S	S																									T	T
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	P	Q	D	V	N	N	A	L	L	W	L	T	G	S	L	W	G	R	D	W	S	F	V	K	I	A	I	P	L	M	I	L	F	L	P	L	S	L	S	F	C	R	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	N	D	D	D	P	K	G	I	S	V	T	S	S	M	F	V	T	D	R	S	F	N	I	A	A	Y	G	I	M	I	V	L	A	V	L	Y	T	L	F	W	V	L	Y	K
Template Known Secondary structure		S	S	S	S		T	T							S						T	T																					T	T
Template Predicted Secondary structure
Template SS confidence
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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