Job Description P19624 Confidence 98.32% Date Thu Jan 5 11:37:23 GMT 2012 Rank 25 Aligned Residues 258 % Identity 18% Template d1v53a1 SCOP info Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like Dimeric isocitrate & isopropylmalate dehydrogenases Resolution 2.85

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	V	I	T	P	G	E	P	A	G	I	G	P	D	L	V	V	Q	L	A	Q	R	E	W	P	V	E	L	V	V	C	A	D	A	T	L	L	T	N	R	A	A	M	L	G	L	P	L	T	L	R	P	Y	S	P	N	S	P	A	Q	P	Q	T	A	G	T	L	T	L	L	P	V	A	L	R	A	P	V	T
Query Conservation
Alig confidence										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	A	V	L	P	G	D	.	.	G	I	G	P	E	V	M	D	A	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	L	K	T	V	L	D	N	D	G	H	E	A	V	F	E	N	A	L	I	G	G	A	A	I	D	E	A	G	T	P	L	P	E	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									S	.	.	T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	S	S											T								S	S	S	S			.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.			.	.	.	.	.	.	.	.	20	.	.															.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		A	G	Q	L	A	V	E	N	G	H	Y	V	V	E	T	L	A	R	A	C	D	G	C	L	N	G	E	F	A	A	L	I	T	G	P	V	H	K	G	V	I	N	D	A	G	I	P	F	T	G	H	T	E	F	F	E	E	R	S	Q	A	K	K	V	V	M	M	L	A	T	E	E	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.																																															.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	L	D	I	C	R	.	.	R	S	D	A	I	L	L	G	A	V	G	G	P	K	W	D	H	N	P	A	S	L	R	P	E	K	G	L	L	G	L	R	K	E	M	G	L	F	A	N	L	R	P	V	K	A	Y	A	T	L	L	N	A	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	T	S	S										G	G	G	S	S	S		G	G	G														T												G	G	G	T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template SS confidence
																			58	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
													158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.															.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	L	R	V	A	L	A	T	T	H	L	P	L	R	D	I	A	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	P	A	L	L	H	E	V	I	A	I	L	H	H	D	L	R	T	K	F	G	I	A	E	P	R	I	L	V	C	G	L	N	P	H	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.										.	.	.	.	.
Template Conservation																																																																.	.	.	.										.	.	.	.	.
Template Sequence		P	L	K	R	E	R	V	E	N	V	D	L	V	I	V	R	E	L	T	G	G	L	Y	F	G	R	P	S	E	R	R	G	P	G	E	N	E	V	V	D	T	L	A	Y	T	R	E	E	I	E	R	I	I	E	K	A	F	Q	L	A	Q	I	.	.	.	.	R	R	K	K	L	A	S	V	D	.	.	.	.	.
Template Known Secondary structure		S	S						T	T										S	S	B	T	T	T		S						S	S	T	T								B																				.	.	.	.	T	T	S							.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.										.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.			.	.	.	.					.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure												.	.															.	.																				.									.	.					.	.	.	.
Query SS confidence												.	.															.	.																				.									.	.					.	.	.	.
Query Sequence		G	E	G	G	H	M	G	T	E	E	.	.	I	D	T	I	I	P	V	L	N	E	L	R	A	Q	.	.	G	M	K	L	N	G	P	L	P	A	D	T	L	F	Q	P	K	Y	L	.	D	N	A	D	A	V	L	A	.	.	M	Y	H	D	.	.	.	.	Q	G	L	P	V	L	K	Y	Q	G	F	G	R	G
Query Conservation												.	.															.	.																				.									.	.					.	.	.	.
Alig confidence		.	.	.	.	.						.	.															.	.																				.									.	.					.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	K	A	N	V	L	E	S	S	R	M	W	R	E	I	A	E	E	T	A	K	K	Y	P	D	V	E	L	S	H	M	L	V	D	S	T	S	M	Q	L	I	A	N	P	G	Q	F	D	V	I	V	T	E	N	M	F	G	D	I	L	S	D	E	A	S	V	I	T	G	S	L	G	M	L	P	S
Template Known Secondary structure		.	.	.	.	.		T	T	T																T	T		T	T	S																		G	G	G		S																	T	T	T	T	S		T	T	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	I	T	L	G	L	P	F	I	R	T	S	V	D	H	G	T	A	L	E	L	A	G	R	G	K	A	D	V	G	S	F	I	T	A	L	N	L	A	I	K
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		A	S	L	R	.	S	D	R	F	G	M	Y	E	P	V	H	G	S	A	P	D	I	A	G	Q	G	K	A	N	P	L	G	T	V	L	S	A	A	L	M	L	R
Template Known Secondary structure						.	S	S	S							S	S				G	G	G	T	T	S	S
Template Predicted Secondary structure						.
Template SS confidence
		265	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions