Job Description P19624 Confidence 98.55% Date Thu Jan 5 11:37:23 GMT 2012 Rank 21 Aligned Residues 256 % Identity 17% Template c3u1hA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:3-isopropylmalate dehydrogenase; PDBTitle: crystal structure of ipmdh from the last common ancestor of bacillus Resolution 2.80 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	V	V	I	T	P	G	E	P	A	G	I	G	P	D	L	V	V	Q	L	A	Q	R	E	W	P	V	E	L	V	V	C	A	D	A	T	L	L	T	N	R	A	A	M	L	G	L	P	L	T	L	R	P	Y	S	P	N	S	P	A	Q	P	Q	T	A	G	T	L	T	L	L	P	V	A	L	R	A	P	V
Query Conservation
Alig confidence											.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Template Conservation											.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Template Sequence		K	K	I	A	V	L	P	G	D	.	.	G	I	G	P	E	V	M	E	A	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	L	K	A	V	A	E	R	F	G	H	E	F	E	F	E	Y	G	L	I	G	G	A	A	I	D	E	A	G	T	P	L	P	E	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S	.	.	T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.											S											T						S	S	S	S	S	S			.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.			.	.	.	.	.	.	.	.	20	.	.															.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		T	A	G	Q	L	A	V	E	N	G	H	Y	V	V	E	T	L	A	R	A	C	D	G	C	L	N	G	E	F	A	A	L	I	T	G	P	V	H	K	G	V	I	N	D	A	G	I	P	F	T	G	H	T	E	F	F	E	E	R	S	Q	A	K	K	V	V	M	M	L	A	T	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.																																													.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	L	D	V	C	R	.	.	G	S	D	A	I	L	L	G	A	V	G	G	P	K	W	D	Q	N	P	S	E	L	R	P	E	K	G	L	L	G	I	R	K	G	L	D	L	F	A	N	L	R	P	V	K	V	Y	D	S	L	A	D	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	T	S	S										S	T	T	T	S	S			S	S	S	S	S										T	T												G	G	G	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template SS confidence
																				58	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
										156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.																.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	E	E	L	R	V	A	L	A	T	T	H	L	P	L	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	D	A	I	T	P	A	L	L	H	E	V	I	A	I	L	H	H	D	L	R	T	K	F	G	I	A	E	P	R	I	L	V	C	G	L	N	P	H	A
Query Conservation		.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.									.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.									.	.	.	.	.
Template Conservation																		.	.	.	.	.	.																																										.	.	.	.									.	.	.	.	.
Template Sequence		S	P	L	K	K	E	V	I	E	G	V	D	L	V	I	V	.	.	.	.	.	.	R	E	L	T	G	G	L	Y	F	E	E	G	E	E	A	A	V	D	T	L	L	Y	T	R	E	E	I	E	R	I	I	R	K	A	F	E	L	A	L	T	R	.	.	.	.	K	K	K	V	T	S	V	D	.	.	.	.	.
Template Known Secondary structure		S	S	S						S	S							.	.	.	.	.	.				S	S	B	S				T	T		S							B																			T	T	.	.	.	.	T	S							.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.																																										.	.	.	.									.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.							.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.					.	.	.	.	.	180	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.			.	.	.	.					.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																																													.									.	.					.	.	.	.
Query SS confidence																																													.									.	.					.	.	.	.
Query Sequence		G	E	G	G	H	M	G	T	E	E	I	D	T	I	I	P	V	L	N	E	L	R	A	Q	G	M	K	L	N	G	P	L	P	A	D	T	L	F	Q	P	K	Y	L	.	D	N	A	D	A	V	L	A	.	.	M	Y	H	D	.	.	.	.	Q	G	L	P	V	L	K	Y	Q	G	F	G	R	G	V	N	I	T
Query Conservation																																													.									.	.					.	.	.	.
Alig confidence																				.																									.									.	.					.	.	.	.
Template Conservation																				.
Template Sequence		K	A	N	V	L	E	S	S	R	L	W	R	E	V	A	E	E	V	.	A	K	E	Y	P	D	V	E	L	E	H	M	L	V	D	N	A	A	M	Q	L	I	R	N	P	R	Q	F	D	V	I	V	T	E	N	M	F	G	D	I	L	S	D	E	A	S	M	I	T	G	S	L	G	M	L	P	S	A	S	L	S
Template Known Secondary structure			T	T	T															.		T	T		T	T	S																		G	G	G		S																					S		T	T	T
Template Predicted Secondary structure																				.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
			286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	L	G	L	P	F	I	R	T	S	V	D	H	G	T	A	L	E	L	A	G	R	G	K	A	D	V	G	S	F	I	T	A	L	N	L	A	I	K
Query Conservation		.
Alig confidence		.							.	.
Template Conservation									.	.
Template Sequence		T	D	G	L	G	L	Y	.	.	E	P	V	H	G	S	A	P	D	I	A	G	K	G	I	A	N	P	L	A	T	I	L	S	A	A	M	M	L	R
Template Known Secondary structure		T	T	S					.	.			S	S				T	T	T	T	T	S	S		S		T
Template Predicted Secondary structure									.	.
Template SS confidence
		269	270	.	.	.	.	.			.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions