Job Description P19624 Confidence 98.57% Date Thu Jan 5 11:37:23 GMT 2012 Rank 20 Aligned Residues 260 % Identity 18% Template c3r8wC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:3-isopropylmalate dehydrogenase 2, chloroplastic; PDBTitle: structure of 3-isopropylmalate dehydrogenase isoform 2 from2 arabidopsis thaliana at 2.2 angstrom resolution Resolution 2.25 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	Q	R	V	V	I	T	P	G	E	P	A	G	I	G	P	D	L	V	V	Q	L	A	Q	R	E	W	P	V	E	L	V	V	C	A	D	A	T	L	L	T	N	R	A	A	M	L	G	L	P	L	T	L	R	P	Y	S	P	N	S	P	A	Q	P	Q	T	A	G	T	L	T	L	L	P	V	A	L	R	A
Query Conservation
Alig confidence													.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation													.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Sequence		K	R	Y	T	I	T	L	L	P	G	D	.	.	G	I	G	P	E	V	V	S	I	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	L	Q	Q	A	G	S	L	E	G	V	E	F	N	F	R	E	M	P	I	G	G	A	A	L	D	L	V	G	V	P	L	P	E	.	.	.	.	.	.	.
Template Known Secondary structure												S	.	.	T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T																			S	S	S	S			.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.															.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		P	V	T	A	G	Q	L	A	V	E	N	G	H	Y	V	V	E	T	L	A	R	A	C	D	G	C	L	N	G	E	F	A	A	L	I	T	G	P	V	H	K	G	V	I	N	D	A	G	I	P	F	T	G	H	T	E	F	F	E	E	R	S	Q	A	K	K	V	V	M	M	L	A	T	E	E	L	R	V	.	.
Query Conservation																																																																																.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.																																																	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	I	S	A	A	K	E	.	.	S	D	A	V	L	L	G	A	I	G	G	Y	K	W	D	N	N	E	K	H	L	R	P	E	K	G	L	L	Q	I	R	A	A	L	K	V	F	A	N	L	R	P	A	T	V	L	P	Q	L	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	S	S														T	S		G	G	G	S													T												G	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template SS confidence
																						60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
																																161	.	.	.	.	.	.	.	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	A	T	T	H	L	P	L	R	D	I	A	D	A	.	.	.	I	T	P	A	L	L	H	E	V	I	A	I	L	H	H	D	L	R	T	K	F	G	I	A	E	P	R	I	L	V	C	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.																					.	.	.	.
Template Conservation																																																																						.	.	.	.
Template Sequence		D	A	S	T	L	K	R	E	V	A	E	G	V	D	L	M	V	V	R	E	L	T	G	G	I	Y	F	G	E	P	R	G	I	K	T	N	E	N	G	E	E	V	G	F	N	T	E	V	Y	A	A	H	E	I	D	R	I	A	R	V	A	F	E	T	A	R	K	R	.	.	.	.	R	G	K	L	C	S	V	D
Template Known Secondary structure		G	G	S	S	S						T	T										S		S	T	T	T		S	S							G	G	G																												T	T	.	.	.	.	T	S
Template Predicted Secondary structure																																																																						.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.			.	.	.	.					.	.	270	.	.	.	.	.	.
Predicted Secondary structure																.	.	.																																			.	.									.	.					.	.	.	.
Query SS confidence																.	.	.																																			.	.									.	.					.	.	.	.
Query Sequence		L	N	P	H	A	G	E	G	G	H	M	G	T	E	.	.	.	E	I	D	T	I	I	P	V	L	N	E	L	R	A	Q	G	M	K	L	N	G	P	L	P	A	D	T	L	F	Q	P	K	Y	L	.	.	D	N	A	D	A	V	L	A	.	.	M	Y	H	D	.	.	.	.	Q	G	L	P	V	L	K	Y	Q
Query Conservation																.	.	.																																			.	.									.	.					.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.					.	.	.																																			.	.									.	.					.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	K	A	N	V	L	E	A	S	I	L	W	R	K	R	V	T	A	L	A	S	E	Y	P	D	V	E	L	S	H	M	Y	V	D	N	A	A	M	Q	L	V	R	D	P	K	Q	F	D	T	I	V	T	N	N	I	F	G	D	I	L	S	D	E	A	S	M	I	T	G	S	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.		T	T	T															G	G	G	S	T	T	S																		G	G	G		S																					S		G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		G	F	G	R	G	V	N	I	T	L	G	L	P	.	F	I	R	T	S	V	D	H	G	T	A	L	E	L	A	G	R	G	K	A	D	V	G	S	F	I	T	A	L	N	L	A	I	K
Query Conservation															.
Alig confidence										.	.				.
Template Conservation										.	.
Template Sequence		G	M	L	P	S	A	S	L	.	.	S	D	S	G	P	G	L	F	E	P	I	H	G	S	A	P	D	I	A	G	Q	D	K	A	N	P	L	A	T	I	L	S	A	A	M	L	L	K
Template Known Secondary structure		G	G							.	.		S	S	S							S	S				T	T	S	T	T	T	T				T
Template Predicted Secondary structure										.	.
Template SS confidence
		264	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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