 |
Job Description | P19624 | Confidence | 29.02% | Date | Thu Jan 5 11:37:23 GMT 2012 |
Rank | 87 | Aligned Residues | 73 |
% Identity | 19% | Template | c3ivdA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:nucleotidase; |
PDBTitle: putative 5'-nucleotidase (c4898) from escherichia coli in2 complex with uridine
|
Resolution | 1.90 Å |
|
 |
  |   |
202 | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|  |  | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
R | I | L | V | C | G | L | N | P | H | A | G | E | G | G | H | M | G | T | E | E | I | D | T | I | I | P | V | L | N | E | L | R | A | Q | G | M | K | L | N | G | P | L | P | A | D | T | L | F | Q | P | K | Y | L | D | N | A | D | A | V | L | A | M | Y | H | D | Q | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
|
|
|
|
|   |
|
|
|
|
|
|
|   |
|   |   |
|   |
|
|   |   |   |
|   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |
|
|   |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
| . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
|
|
|
|
|
|   | . | . | . | . | . | . | . | . | . |   |   |   | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |
|
|
|
|   |
| . |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
K | I | G | V | I | G | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
H | G | V | . |
. |
. |
F | A | F | N | D | T | V | S | A | A | T | R | V | G | I | E | A | R | D | E | I | K | W | L | Q | R | Y | I | D | E | L | K | G | K | V | D | L | T | V | A | L | I | H | . |
E | G | V | P | A | R | Q | S | S | X | G | G | T | D |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |
|  | . | . | . |  |  |  |  |  |  | S |
| G | G | G | S | T | T |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
| S |  |  |  |  |  |  |  | . |
| S | S |
|
|
|
|
| S | S | G | G | G | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
160 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | |
|
|
170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | |
. | . | . | . | . | . | . | 220 | . | . | . | . | . | . |
  |
  |   |
|
|
|
|
|
270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
L | P | V | L | K | Y | Q | G | F | G | R | G | V | N | I | T | L | G |
Query Conservation |   |
. | . | . | . | . |   |
|   |
|
|   |
|   |
|   |   |   |
|
|   |
|
|
|
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
Template Sequence |   |
V | R | R | A | L | D | K | D | I | Q | T | A | S | Q | V | K | G | L | D | I | L | I | T |
Template Known Secondary structure |   |
S |
|
|
|
|  |  |  |  |  |  |  |  |  |
| S | S |
|
|  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
227 | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|