Job Description P19624 Confidence 98.49% Date Thu Jan 5 11:37:23 GMT 2012 Rank 22 Aligned Residues 251 % Identity 18% Template c3blxL_ PDB info PDB header:oxidoreductase Chain: L: PDB Molecule:isocitrate dehydrogenase [nad] subunit 2; PDBTitle: yeast isocitrate dehydrogenase (apo form) Resolution 2.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	T	Q	R	V	V	I	T	P	G	E	P	A	G	I	G	P	D	L	V	V	Q	L	A	Q	R	E	W	P	V	E	L	V	V	C	A	D	A	T	L	L	T	N	R	A	A	M	L	G	L	P	L	T	L	R	P	Y	S	P	N	S	P	A	Q	P	Q	T	A	G	T	L	T	L	L	P	V	A	L	R
Query Conservation
Alig confidence														.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.													.	.	.	.	.	.
Template Conservation														.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.													.	.	.	.	.	.
Template Sequence		T	G	K	Y	T	V	S	F	I	E	G	D	.	.	G	I	G	P	E	I	S	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	K	I	F	S	A	A	N	V	P	I	E	W	E	S	C	D	V	S	.	P	I	F	V	N	G	L	T	T	I	P	D	.	.	.	.	.	.
Template Known Secondary structure		T	S					B					S	.	.	T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	T		S										.					T	T							.	.	.	.	.	.
Template Predicted Secondary structure														.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.													.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.																			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.																		.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	P	V	T	A	G	Q	L	A	V	E	N	G	H	Y	V	V	E	T	L	A	R	A	C	D	G	C	L	N	G	E	F	A	A	L	I	T	G	P	V	H	K	G	V	I	N	D	A	G	I	P	F	T	G	H	T	E	F	F	E	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.													.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.													.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	V	Q	S	I	T	.	.	K	N	L	V	A	L	K	G	P	L	A	T	.	.	.	.	.	.	.	.	P	H	R	S	L	N	L	T	L	R	K	T	F	G	L	F	A	N	V	R	P	A	K	S	I	E	G	F	K	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.			S										.	.	.	.	.	.	.	.													T	T												T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.													.	.	.	.	.	.	.	.
Template SS confidence
																							72	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90									.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																						.												.	.	.
Query SS confidence																						.												.	.	.
Query Sequence		Q	A	K	K	V	V	M	M	L	A	T	E	E	L	R	V	A	L	A	T	.	T	H	L	P	L	R	D	I	A	D	A	.	.	.	I	T	P	A	L	L	H	E	V	I	A	I	L	H	H	D	L	R	T	K	F	G	I	A	E	P	R	I	L	V	C	G	L	N	P	H	A	G	E	G	G	H	M	G	T
Query Conservation																						.												.	.	.
Alig confidence																						.												.	.	.																					.	.	.										.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.										.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Y	E	N	V	D	L	V	L	I	R	E	N	T	E	G	E	Y	S	G	I	E	H	I	V	C	P	G	V	V	Q	S	I	K	L	I	T	R	D	A	S	E	R	V	I	R	Y	A	F	E	Y	A	R	A	I	.	.	.	G	R	P	R	V	I	V	V	H	.	.	.	.	.	.	.	.	.	.	K	S	T
Template Known Secondary structure		S	S		S										S	S										S	S	T	T																											T	.	.	.	T		S							.	.	.	.	.	.	.	.	.	.	S		T
Template Predicted Secondary structure																																																									.	.	.										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.				180	.	.	.	.	.	.	.	.											.	190	.
		221	.	.	.					.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.			260	.	.	.			.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.
Predicted Secondary structure						.	.	.	.												.																					.					.	.					.	.					.																				.	.
Query SS confidence						.	.	.	.												.																					.					.	.					.	.					.																				.	.
Query Sequence		E	E	I	D	.	.	.	.	T	I	I	P	V	L	N	E	L	R	A	.	Q	G	M	K	L	N	G	P	L	P	A	D	T	L	F	Q	P	K	Y	L	.	D	N	A	D	.	.	A	V	L	A	.	.	M	Y	H	D	.	Q	G	L	P	V	L	K	Y	Q	G	F	G	R	G	V	N	I	T	L	.	.	G
Query Conservation						.	.	.	.												.																					.					.	.					.	.					.																				.	.
Alig confidence						.	.	.	.												.																					.					.	.					.	.					.																				.	.
Template Conservation
Template Sequence		I	Q	R	L	A	D	G	L	F	V	N	V	A	K	E	L	S	K	E	Y	P	D	L	T	L	E	T	E	L	I	D	N	S	V	L	K	V	V	T	N	P	S	A	Y	T	D	A	V	S	V	C	P	N	L	Y	G	D	I	L	S	D	L	N	S	G	L	S	A	G	S	L	G	L	T	P	S	A	N	I	G
Template Known Secondary structure		T	T																T	T		T	T	S																		G	G	G	G	T	T																						T	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	F	I	R	T	S	V	D	H	G	T	A	L	E	L	A	G	R	G	K	A	D	V	G	S	F	I	T	A	L	N	L	A	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	K	I	S	I	F	E	A	V	H	G	S	A	P	D	I	A	G	Q	D	K	A	N	P	T	A	L	L	L	S	S	V	M	M	L	N
Template Known Secondary structure		S	S								S				G	G	G	T	T	T	T				T
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions