Job Description P19624 Confidence 100.00% Date Thu Jan 5 11:37:23 GMT 2012 Rank 7 Aligned Residues 292 % Identity 18% Template c2iv0A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase; PDBTitle: thermal stability of isocitrate dehydrogenase from2 archaeoglobus fulgidus studied by crystal structure3 analysis and engineering of chimers Resolution 2.5 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.						.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.
Query SS confidence																													.	.	.	.	.
Query Sequence		M	V	K	T	Q	R	V	V	I	T	P	G	E	P	A	G	I	G	P	D	L	V	V	Q	L	A	Q	.	.	.	.	.	R	E	W	P	V	E	L	V	V	C	A	D	A	T	L	L	T	N	R	A	A	M	L	G	L	P	L	T	L	R	P	Y	S	P	N	S	P	A	Q	P	Q	T	A	G	T	L	T	L
Query Conservation																													.	.	.	.	.
Alig confidence															.	.													.	.	.	.	.
Template Conservation															.	.
Template Sequence		V	P	D	N	P	I	I	P	Y	F	E	G	D	.	.	G	I	G	K	D	V	V	P	A	A	I	R	V	L	D	A	A	A	D	K	I	G	K	E	V	V	W	F	Q	V	Y	A	G	E	D	A	Y	K	L	Y	G	N	Y	L	P	D	D	T	L	N	A	I	K	E	F	R	V	A	L	K	G	P	L	T	T
Template Known Secondary structure				S	S	B								S	.	.	T	T																				T											S								S		S	S
Template Predicted Secondary structure															.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	P	V	A	L	R	A	P	V	T	A	G	Q	L	A	V	E	N	G	H	Y	V	V	E	T	L	A	R	A	C	D	G	C	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	F	A	A	L	I	T	G	P	V	H	K	G	V	I	N	D	A	G	I	P	F	T	G	H	T	E
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	G	G	G	Y	R	S	L	N	V	T	I	R	Q	V	L	D	L	Y	A	N	V	R	P	V	Y	Y	L	K	G	V	P	S	P	I	K	H	P	E	K	V	N	F	V	I	F	R	E	.	N	T	E	D	V	Y	A	G	I	E	W	P	R	G	S	E	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S	S	S	S										T	T												T	T	S			S	S	S		G	G	G									.		S	S	S	G	G	G						T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.
Template SS confidence
															102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	E	E	R	S	Q	A	K	K	V	V	M	M	L	A	T	E	E	L	R	V	A	L	A	T	T	H	L	P	L	R	D	I	A	D	A	I	T	P	A	L	L	H	E	V	I	A	I	L	H	H	D	L	R	T	K	F	G	I	A	E	P	R	I	L	V	C	G	L	N	P	H	A	G	E	G	G	H	M
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.																					.						.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.																					.						.
Template Sequence		A	L	K	L	I	R	F	L	K	N	E	F	G	V	T	I	R	E	D	S	G	I	G	I	.	.	.	.	.	.	.	.	.	.	.	K	P	I	S	E	F	A	T	K	R	L	V	R	M	A	I	R	Y	A	I	.	E	N	N	R	K	.	S	V	T	L	V	H	K	G	N	I	M	K	Y	T	E	G	A	F
Template Known Secondary structure																			T	T						.	.	.	.	.	.	.	.	.	.	.																					.		T	T		S	.								T	T	T		T	T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.																					.						.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.												.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.															240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.							.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.									.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.									.	.	.	.	.	.
Query Sequence		G	T	E	E	I	D	T	I	I	P	V	L	N	E	L	R	A	Q	G	M	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	G	P	L	P	A	D	T	L	F	Q	P	K	Y	L	.	.	D	N	A	D	A	V	L	A	.	.	.	.	.	.	M	Y	H	D	Q	G	L	P	V	L	K	Y	Q
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.									.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.									.	.	.	.	.	.
Template Conservation
Template Sequence		R	D	W	G	Y	E	V	A	K	Q	E	F	G	E	Y	C	I	T	E	D	E	L	W	D	K	Y	G	G	K	Q	P	E	G	K	I	V	V	K	D	R	I	A	D	N	M	F	Q	Q	I	L	T	R	T	D	E	Y	D	V	I	A	L	P	N	L	N	G	D	Y	L	S	D	A	A	A	A	L	I	G	G	L
Template Known Secondary structure													S	T	T	T												T	T				T	T									G	G	G								S	G	G	G																						T	T		G
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	G	R	G	V	N	I	T	L	G	L	P	F	I	R	T	S	V	D	H	G	T	A	L	E	L	A	G	R	G	K	A	D	V	G	S	F	I	T	A	L	N	L	A	I	K
Query Conservation
Alig confidence																		.	.
Template Conservation																		.	.
Template Sequence		G	I	A	P	G	S	N	I	G	D	G	I	G	V	F	E	.	.	P	V	H	G	S	A	P	K	Y	A	G	Q	N	K	V	N	P	T	A	E	I	L	T	G	A	L	M	F	E
Template Known Secondary structure		G	G								T	T						.	.		S	S				S	T	T	T	T	S	S		S
Template Predicted Secondary structure																		.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330			.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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