Job Description P19624 Confidence 99.95% Date Thu Jan 5 11:37:23 GMT 2012 Rank 12 Aligned Residues 288 % Identity 14% Template c1tyoA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase; PDBTitle: isocitrate dehydrogenase from the hyperthermophile aeropyrum pernix in2 complex with etheno-nadp Resolution 2.15 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.
Query SS confidence																																																		.	.	.
Query Sequence		K	T	Q	R	V	V	I	T	P	G	E	P	A	G	I	G	P	D	L	V	V	Q	L	A	Q	R	E	W	P	V	E	L	V	V	C	A	D	A	T	L	L	T	N	R	A	A	M	L	.	.	.	G	L	P	L	T	L	R	P	Y	S	P	N	S	P	A	Q	P	Q	T	A	G	T	L	T	L	L	P	V	A
Query Conservation																																																		.	.	.
Alig confidence													.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation													.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	N	P	V	V	A	F	I	R	G	D	.	.	G	V	G	P	E	V	V	E	S	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	V	D	A	A	V	K	K	V	Y	G	G	S	R	R	I	V	W	W	E	L	L	A	G	H	L	A	R	E	K	C	G	E	L	L	P	K	A	T	L	E
Template Known Secondary structure		S	S	B								S	.	.	T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T	S											S								S	S	S	S
Template Predicted Secondary structure													.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.															.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		80	.	.			.	.					.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.																	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure					.	.			.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.			.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	A	.	.	P	V	.	.	.	.	T	A	G	Q	L	A	V	E	N	G	H	Y	V	V	E	T	L	A	R	A	C	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	L	N	G	E	F	A	A	L	I	T	G	P	V	H	K	G	V	I	N	D	A	G	I	P	F	T	G	H	T
Query Conservation					.	.			.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.			.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Conservation																																																											.
Template Sequence		G	I	R	L	A	R	V	A	L	K	G	P	L	E	T	P	V	G	T	G	Y	R	S	L	N	V	A	I	R	Q	A	L	D	L	Y	A	N	I	R	P	V	R	Y	Y	G	Q	P	A	P	H	K	Y	A	D	R	V	D	.	M	V	I	F	R	E	N	T	E	D	V	Y	A	G	I	E	W	P	H	D	S	P
Template Known Secondary structure							S											T	T	S		T	T											T												S				S		T	T	G	G	G			.								S	S	S	G	G	G						T	T	S
Template Predicted Secondary structure																																																											.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	F	E	E	R	S	Q	A	K	K	V	V	M	M	L	A	T	E	E	L	R	V	A	L	A	T	T	H	L	P	L	R	D	I	A	D	A	I	T	P	A	L	L	H	E	V	I	A	I	L	H	H	D	L	R	T	K	F	G	I	A	E	P	R	I	L	V	C	G	L	N	P	H	A	G	E	G	G	H
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.																					.														.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.																					.														.
Template Sequence		E	A	A	R	I	R	R	F	L	A	E	E	F	G	I	S	I	R	E	D	A	G	I	G	V	.	.	.	.	.	.	.	.	.	.	.	K	P	I	S	R	F	A	T	R	R	L	M	E	R	A	L	E	W	A	L	.	R	N	G	N	T	V	V	T	I	M	H	K	G	.	N	I	M	K	Y	T	E	G	A
Template Known Secondary structure																				T	T						.	.	.	.	.	.	.	.	.	.	.																					.			T										T	.	T	T	S	T	T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.																					.														.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.												.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.															.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Query Sequence		M	G	T	E	E	I	D	T	I	I	P	V	L	N	E	L	R	A	Q	G	M	K	L	N	G	P	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	T	L	F	Q	P	K	Y	L	.	.	D	N	A	D	A	V	L	A	M	Y	H	D	Q	G	L	P	V	L	K	Y	Q	G	F	G	R	G
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation
Template Sequence		F	M	R	W	A	Y	E	V	A	L	E	K	F	R	E	H	V	V	T	E	Q	E	V	Q	E	K	Y	G	G	V	R	P	E	G	K	I	L	V	N	D	R	I	A	D	N	M	L	Q	Q	I	I	T	R	P	W	D	Y	Q	V	I	V	A	P	N	L	N	G	D	Y	I	S	D	A	A	S	A	L	V	G	G
Template Known Secondary structure														S	G	G	G											S	T	T				T	T																				G	G	G		S																				T	T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.					.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		V	N	I	T	L	G	L	P	F	I	R	T	S	.	.	.	.	V	D	H	G	T	A	L	E	L	A	G	R	G	K	A	D	V	G	S	F	I	T	A	L	N	L
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.
Template Conservation
Template Sequence		I	G	M	A	A	G	M	N	M	G	D	G	I	A	V	A	E	P	V	H	G	T	A	P	K	Y	A	G	K	D	L	I	N	P	S	A	E	I	L	S	A	S	L
Template Known Secondary structure		G	G	G								S	S							S	S				G	G	G	T	T	S	S		S
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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