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Job DescriptionQ46939
Confidence100.00%DateThu Jan 5 12:35:58 GMT 2012
Rank35Aligned Residues296
% Identity22%Templatec3o04A_
PDB info PDB header:transferaseChain: A: PDB Molecule:beta-keto-acyl carrier protein synthase ii; PDBTitle: crystal structure of the beta-keto-acyl carrier protein synthase ii2 (lmo2201) from listeria monocytogenes
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2...... .10.........20. ........30.....
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Query Sequence  KDVVIVG. ALRTPIGCFRGAL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AGHSAVELGSLVVK
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Template Sequence  RRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKXTRLNPDDFPVKIAAELKDFDVEKYLEKKEARKXDRFTHYAIASAE
Template Known Secondary structure 

BTTBSSTT




SS
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   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   36...40......... 50......... 60.........70.........80.....
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Query Sequence  ALIERTGVPAYAVD. . . . EVILGQVLTA. . . . . . . . . . . . . . . . . . . . . . . . . . GAGQNPARQSAIKGGLPNSVSAITIN
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Template Sequence  XAVQDSGLVIDDSNANRVGVWIGSGIGGXETFETQYEIFLNRGHRRVSPFFVPXXIPDXGSGQVSIRFGAKG. . INSTTV
Template Known Secondary structure  T



TTTGGG
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   84.....90.........100.........110.........120.........130.........140.........150..... ....160.
 
   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  DVCGSGLKALHLATQAIQCGEADIVIAGGQENMSRAPHVLTDSRTGAQLGNSQLVDSLVHDGLWDAFNDYHIGVTAENLA
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Template Sequence  TACATATNSIGDAFKVIERGDADAXITGGAEAPITKXSLAGFTANKALSLN. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
GGGTTS
S


STT
B


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   162.......170.........180.........190.........200.........210..
 
   166...170.........180.........190.........200.........210.........220.........230.........240.....
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Query Sequence  REYGISRQLQDAYALSSQQKARAAIDAGRFKDEIVPVMTQSNGQTLVVDTDEQPRTDASAEGLARLNPSFDSLGSVTAGN
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PDPETACRPFDKDRD
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TTTS

TTBTT

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   213......220.......
 
   246...250.........260.........270.........280... ......290.........300.........310.........320
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Query Sequence  ASSINDGAAAVMMMSEAKARALNLPVLARIRAFASVGV. . . . . DPALMGIAPVYATRRCLERVGWQLAEVDLIEANEAFA
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Template Sequence  GFIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAXKXAIDDAGLTPDKVDYINAHGTST
Template Known Secondary structure  SB
BB
T





S
SSS

GGGT

GGG







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   228.230.........240.........250.........260.........270.........280.........290.........300.......
 
   321. .......330.........340.........350.........360....... .
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Query Sequence  AQ. . . . . ALSVGKMLEWDERRVNVNGGAIALGHPIGASGCRILVSLVHEMVK. . . . . . . . . . . . . . . . . . . . . . . . . . . R
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Template Sequence  PYNDEYETQAIKTVFGEHAKKLAISSTKSXTGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDYVPNEAREA
Template Known Secondary structure  GGGTTTS
T
B
GGGT

BTT

SB
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BSS

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   308.310.........320.........330.........340.........350.........360.........370.........380.......
 
   369370.........380.........390...
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Query Sequence  NARKGLATLCIGGGQGVALTIERDE
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Template Sequence  NVNVVISNSFGFGGHNATLVFKRIE
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TTT


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   388.390.........400.........410..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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