Job Description Q46939 Confidence 100.00% Date Thu Jan 5 12:35:58 GMT 2012 Rank 8 Aligned Residues 381 % Identity 40% Template c2wuaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:acetoacetyl coa thiolase; PDBTitle: structure of the peroxisomal 3-ketoacyl-coa thiolase from2 sunflower Resolution 1.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																																											.
Query SS confidence																			.																																											.
Query Sequence		K	D	V	V	I	V	G	A	L	R	T	P	I	G	C	F	R	.	G	A	L	A	G	H	S	A	V	E	L	G	S	L	V	V	K	A	L	I	E	R	T	G	V	P	A	Y	A	V	D	E	V	I	L	G	Q	V	L	T	A	G	.	A	G	Q	N	P	A	R	Q	S	A	I	K	G	G	L	P	N	S	V
Query Conservation																			.																																											.
Alig confidence																			.																																											.
Template Conservation
Template Sequence		D	D	V	V	I	V	A	A	Y	R	S	P	L	C	K	A	K	R	G	G	L	K	D	T	Y	P	D	D	I	L	A	P	V	L	K	A	L	I	E	K	T	N	I	N	P	A	E	V	G	D	I	V	V	G	S	V	L	G	A	G	S	Q	R	A	S	E	C	R	M	A	A	F	Y	A	G	F	P	E	T	V
Template Known Secondary structure																	T	T	T	S	T	T	T	T	S																					G	G	G										S	S																T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	I	T	I	N	D	V	C	G	S	G	L	K	A	L	H	L	A	T	Q	A	I	Q	C	G	E	A	D	I	V	I	A	G	G	Q	E	N	M	S	R	A	P	H	V	L	T	D	S	R	T	G	A	Q	L	G	N	S	Q	L	V	D	S	L	V	H	D	G	L	W	D	A	F	N	D	Y	H	I	G	V
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	V	R	T	V	N	R	Q	C	S	S	G	L	Q	A	V	A	D	V	A	A	A	I	K	A	G	F	Y	D	I	G	I	G	A	G	L	E	S	M	T	A	N	P	M	A	W	E	G	S	V	N	P	K	.	.	.	.	.	.	.	.	.	.	.	V	K	T	M	A	Q	A	Q	D	C	L	L	P	M	G	I
Template Known Secondary structure									G	G	G															T	T	S		S										T	T	T							S				G	G	.	.	.	.	.	.	.	.	.	.	.	G	G	G							T	T	S
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180												.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.							.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.
Query Sequence		T	A	E	N	L	A	R	E	Y	G	I	S	R	Q	L	Q	D	A	Y	A	L	S	S	Q	Q	K	A	R	A	A	I	D	A	G	R	F	K	D	E	I	V	P	.	.	.	.	.	.	V	M	T	Q	S	N	G	Q	T	L	V	V	D	T	D	E	Q	P	R	T	D	A	S	A	E	G	L	A	R	L	N	P
Query Conservation																																												.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.
Template Conservation
Template Sequence		T	S	E	N	V	A	Q	K	F	S	I	T	R	Q	E	Q	D	Q	A	A	V	G	S	H	R	K	T	A	A	A	T	A	A	G	R	F	K	D	E	I	I	P	I	K	T	K	I	V	D	P	K	T	G	D	E	K	P	V	T	I	S	V	D	D	G	I	R	P	G	T	S	L	A	D	L	A	K	L	K	P
Template Known Secondary structure											T																								T	T	T	T	T	T	B										T	T	T										S		S				T	T								T
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	D	S	L	G	S	V	T	A	G	N	A	S	S	I	N	D	G	A	A	A	V	M	M	M	S	E	A	K	A	R	A	L	N	L	P	V	L	A	R	I	R	A	F	A	S	V	G	V	D	P	A	L	M	G	I	A	P	V	Y	A	T	R	R	C	L	E	R	V	G	W	Q	L	A	E	V	D	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	F	R	K	D	G	S	T	T	A	G	T	S	S	Q	V	S	D	G	A	G	A	V	L	L	M	K	R	S	I	A	L	Q	K	G	L	P	I	L	G	V	F	R	T	F	A	A	V	G	V	P	P	S	I	M	G	I	G	P	A	V	A	I	P	A	A	V	K	A	A	G	L	Q	I	D	D	I	D	L	F
Template Known Secondary structure		S	S		T	T					G	G	G	B																						T																	G	G	G	G	G	G													T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.			.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		E	A	N	E	A	F	A	A	Q	A	L	S	V	G	K	M	L	E	W	D	E	R	R	V	N	V	N	G	G	A	I	A	L	G	H	P	I	G	A	S	G	C	R	I	L	V	S	L	V	H	E	M	V	K	R	.	.	N	A	R	K	G	L	A	T	L	C	I	G	G	G	Q	G	V	A	L	T	I	E	R
Query Conservation																																																									.	.
Alig confidence																																																									.	.
Template Conservation
Template Sequence		E	I	N	E	A	F	A	S	Q	F	V	Y	C	Q	K	K	L	E	I	D	P	Q	K	I	N	V	N	G	G	A	M	A	I	G	H	P	L	G	A	T	G	A	R	C	V	A	T	L	L	H	E	M	K	R	R	G	R	D	C	R	F	G	V	V	S	M	C	I	G	T	G	M	G	A	A	A	V	F	E	R
Template Known Secondary structure						S	B												T			G	G	G	B		T	T																														T	T											T	T	T
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		392	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		437	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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