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Job DescriptionQ46939
Confidence99.97%DateThu Jan 5 12:35:58 GMT 2012
Rank44Aligned Residues265
% Identity23%Templatec2qnxA_
PDB info PDB header:transferaseChain: A: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 3; PDBTitle: crystal structure of the complex between the mycobacterium beta-2 ketoacyl-acyl carrier protein synthase iii (fabh) and 11-3 [(decyloxycarbonyl)dithio]-undecanoic acid
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11........20.........30.........40.........50.........60.........70.........80.........90
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Query Sequence  RTPIGCFRGALAGHSAVELGSLVVKALIERTGVPAYAVDEVILGQVLTAGAGQNPARQSAIKGGLPNSVSAITINDVCGS
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Template Sequence  RTGIKTRRFAADDESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK. GILGFDLSAGCAG
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S

TT

T

GGG

S



SSS
TT
T.T


GGG
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   36...40.........50.........60.........70.........80.........90.........100. ........110....
 
   91........100.........110.........120.........130.........140.........150.........160.........170
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Query Sequence  GLKALHLATQAIQCGEADIVIAGGQENMSRAPHVLTDSRTGAQLGNSQLVDSLVHDGLWDAFNDYHIGVTAENLAREYGI
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Template Sequence  FGYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDRG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TS
S
GGG

TT
TT..........................................
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   115....120.........130.........140.........150..
 
   171........180.........190.........200.........210.........220.........230.........240.........250
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Query Sequence  SRQLQDAYALSSQQKARAAIDAGRFKDEIVPVMTQSNGQTLVVDTDEQPRTDASAEGLARLNPSFDSLGSVTAGNASSIN
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NCFIFA
Template Known Secondary structure  ..........................................................................TTTTB
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   153.....
 
   251........260.........270.........280......... 290.........300......
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Query Sequence  DGAAAVMMMSEAKARALNLPVLARIRAFASVGVDPALMG. . . . . . . . . . . . . . . . . . . . . . . . IAPVYATRRCLERVGWQ
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Template Sequence  DGAAAVVVGETPFQGIGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGVR
Template Known Secondary structure 
SS

B



GGGGGGSS
STTS




T

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   159160.........170.........180.........190.........200.........210.........220.........230........
 
   307..310.........320.........330.........340.........350.........360.........370.........380......
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Query Sequence  LAEVDLIEANEAFAAQALSVGKMLEWDERRVNVNGGAIALGHPIGASGCRILVSLVHEMVKRNARKGLATLCIGGGQGVA
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Template Sequence  PDQIDVFVPHQANSRINELLVKNLQLRPDAVVAN. DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAA
Template Known Secondary structure  GGG


SS
T

TT


.T
B
GGGTTSS
TT
GGG
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   235....240.........250.........260........ .270.........280.........290.........300.........310...
 
   387..390...
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Query Sequence  LTIERDE
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Template Conservation    
    
Template Sequence  QVVRMPK
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   313......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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