Job Description Q46939 Confidence 100.00% Date Thu Jan 5 12:35:58 GMT 2012 Rank 10 Aligned Residues 376 % Identity 40% Template c2iikA_ PDB info PDB header:transferase Chain: A: PDB Molecule:3-ketoacyl-coa thiolase, peroxisomal; PDBTitle: crystal structure of human peroxisomal acetyl-coa acyl transferase 12 (acaa1) Resolution 2.55 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		K	D	V	V	I	V	G	A	L	R	T	P	I	G	C	.	F	R	G	A	L	A	G	H	S	A	V	E	L	G	S	L	V	V	K	A	L	I	E	R	T	G	V	P	A	Y	A	V	D	E	V	I	L	G	Q	V	L	T	A	G	A	G	Q	N	P	A	R	Q	S	A	I	K	G	G	L	P	N	S	V	S
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		A	D	V	V	V	V	H	G	R	R	T	A	I	C	R	A	G	R	G	G	F	K	D	T	T	P	D	E	L	L	S	A	V	M	T	A	V	L	K	D	V	N	L	R	P	E	Q	L	G	D	I	C	V	G	N	V	L	Q	P	G	A	G	A	I	M	A	R	I	A	Q	F	L	S	D	I	P	E	T	V	P
Template Known Secondary structure		T															T	T	T	S	T	T	T	T																			T			G	G	G									S	S	S	G	G	G	G											T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	T	I	N	D	V	C	G	S	G	L	K	A	L	H	L	A	T	Q	A	I	Q	C	G	E	A	D	I	V	I	A	G	G	Q	E	N	M	S	R	A	P	H	V	L	T	D	S	R	T	G	A	Q	L	G	N	S	Q	L	V	D	S	L	V	H	D	G	L	W	D	A	F	N	D	Y	H	I	G	V	T
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	T	V	N	R	Q	C	S	S	G	L	Q	A	V	A	S	I	A	G	G	I	R	N	G	S	Y	D	I	G	M	A	C	G	V	E	S	M	S	L	A	D	G	N	I	T	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	M	E	K	E	K	A	R	D	C	L	I	P	M	G	I	T
Template Known Secondary structure								G	G	G															T	T	S		S										T	T	T			.				T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G						G	G	G	S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.																.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.						.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.
Query Sequence		A	E	N	L	A	R	E	Y	G	I	S	R	Q	L	Q	D	A	Y	A	L	S	S	Q	Q	K	A	R	A	A	I	D	A	G	R	F	K	D	E	I	V	P	V	M	T	Q	S	N	G	Q	T	L	V	.	.	.	.	.	V	D	T	D	E	Q	P	R	T	D	A	S	A	E	G	L	A	R	L	N	P	S	F
Query Conservation																																																						.	.	.	.	.
Alig confidence																																																						.	.	.	.	.
Template Conservation
Template Sequence		S	E	N	V	A	E	R	F	G	I	S	R	E	K	Q	D	T	F	A	L	A	S	Q	Q	K	A	A	R	A	Q	S	K	G	C	F	Q	A	E	I	V	P	V	T	T	T	V	H	D	D	K	G	T	K	R	S	I	T	V	T	Q	D	E	G	I	R	P	S	T	T	M	E	G	L	A	K	L	K	P	A	F
Template Known Secondary structure									T	T																								T	T	T	T	T	T	B										T	T	S									S		T	T			T	T												S	S
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	L	G	S	V	T	A	G	N	A	S	S	I	N	D	G	A	A	A	V	M	M	M	S	E	A	K	A	R	A	L	N	L	P	V	L	A	R	I	R	A	F	A	S	V	G	V	D	P	A	L	M	G	I	A	P	V	Y	A	T	R	R	C	L	E	R	V	G	W	Q	L	A	E	V	D	L	I	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K	D	G	S	T	T	A	G	N	S	S	Q	V	S	D	G	A	A	A	I	L	L	A	R	R	S	K	A	E	E	L	G	L	P	I	L	G	V	L	R	S	Y	A	V	V	G	V	P	P	D	I	M	G	I	G	P	A	Y	A	I	P	V	A	L	Q	K	A	G	L	T	V	S	D	V	D	I	F	E	I
Template Known Secondary structure		S	T	T					S	T	T	B																						T																	G	G	G	G	G	G														T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		N	E	A	F	A	A	Q	A	L	S	V	G	K	M	L	E	W	D	E	R	R	V	N	V	N	G	G	A	I	A	L	G	H	P	I	G	A	S	G	C	R	I	L	V	S	L	V	H	E	M	V	K	R	N	A	R	.	K	G	L	A	T	L	C	I	G	G	G	Q	G	V	A	L	T	I	E	R	D
Query Conservation																																																										.
Alig confidence																																																										.
Template Conservation
Template Sequence		N	E	A	F	A	S	Q	A	A	Y	C	V	E	K	L	R	L	P	P	E	K	V	N	P	L	G	G	A	V	A	L	G	H	P	L	G	C	T	G	A	R	Q	V	I	T	L	L	N	E	L	K	R	R	G	K	R	A	Y	G	V	V	S	M	C	I	G	T	G	M	G	A	A	A	V	F	E	Y	P
Template Known Secondary structure				S	B												T			G	G	G	B		T	T																													T	S											T	T	T
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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